RNA id: TU43456


Basic Information

Item Value
RNA id TU43456
length 271
lncRNA type inter_gene
GC content 0.56
exon number 1
gene id G29331
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 17818146 ~ 17818416 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGAACTACGCGGTCTTCTGCTGGCCCTTCTTACCGATCAGGGACTTGTGGATGTGAGGAATGACTCCTGCGGGAAGACAGCAAACACACGAGCGCTTCACATCCTCATCCGTCAACGTCAGCGGCGAGCACCAACAAACTAAACTCTGACATACCTCCGCCGGCGATGGTGGCCTTGATGAGCGAGTCCAGCTCCTCGTCTCCACGGATGGCCAGCTGTAGATGGCGAGGTGATGCGCTTCACCTTCAGATCTTTGAAGCGTTTCCTGCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43425 lncRNA upstream 213 17817546 ~ 17817933 (+) True G29317
TU43408 lncRNA upstream 71829 17745528 ~ 17746317 (+) True G29306
TU43407 lncRNA upstream 78479 17738067 ~ 17739667 (+) True G29305
XR_006250674.1 lncRNA upstream 106435 17710055 ~ 17711711 (+) True LOC122343158
XR_006250563.1 lncRNA upstream 148385 17667150 ~ 17669761 (+) True LOC122342426
TU43464 lncRNA downstream 4834 17823250 ~ 17823740 (+) True G29334
TU43465 lncRNA downstream 4977 17823393 ~ 17823771 (+) False G29334
TU43468 lncRNA downstream 4977 17823393 ~ 17823740 (+) False G29334
TU43463 lncRNA downstream 5482 17823898 ~ 17824265 (+) False G29334
TU43454 lncRNA downstream 36045 17854461 ~ 17855364 (+) True G29329
XM_043237278.1 mRNA upstream 6683 17805840 ~ 17811463 (+) True LOC122343009
XM_043236807.1 mRNA upstream 152249 17644435 ~ 17665897 (+) True kdr
XM_043236808.1 mRNA upstream 187324 17582070 ~ 17630822 (+) True clocka
XM_043237493.1 mRNA downstream 83025 17901441 ~ 17902917 (+) True oxt
XM_043237498.1 mRNA downstream 94023 17912439 ~ 17915594 (+) True fabp1a
XM_043237496.1 mRNA downstream 94025 17912441 ~ 17915435 (+) False fabp1a
XM_043237497.1 mRNA downstream 94025 17912441 ~ 17915435 (+) False fabp1a
XM_043237406.1 mRNA downstream 114889 17933305 ~ 17937916 (+) True exosc2
TU42966 other upstream 1343765 16473898 ~ 16474381 (+) True G28982
TU42861 other upstream 1832420 15985219 ~ 15985726 (+) True G28899
TU42853 other upstream 1976291 15841372 ~ 15841855 (+) True G28891
TU42722 other upstream 2162965 15650295 ~ 15655181 (+) True cdkn1d
TU42701 other upstream 2262464 15439334 ~ 15555682 (+) True G28806
TU43729 other downstream 481999 18300415 ~ 18301189 (+) True G29526
TU43756 other downstream 618044 18436460 ~ 18461317 (+) True G29545
TU43926 other downstream 1064763 18883179 ~ 18886402 (+) True G29642
TU44195 other downstream 1471804 19290220 ~ 19342911 (+) True G29814
TU44225 other downstream 1912846 19731262 ~ 19786128 (+) False G29835

Expression Profile