RNA id: TU43465


Basic Information

Item Value
RNA id TU43465
length 379
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G29334
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 17823250 ~ 17824265 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTGAAAGTTTTCCCCTTTATAAAGAAAGAACACAGAGACCGAGTTCACGAGCAGGGATGTTGTAGTGTTAGTGTGTGGAGAAGAACTGCTGCTTCTCTCTACTTTAGGTGTTTTTTTGGTGTCGTACCCTGCGGTGGAGAGCAAAACCAGCATCATCTGAGCGACTTGGTGTGCATCTCATAGTTAGCTCAttcaggatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcatataTAAAGACTCAGATCAAACAGCTTGCAGCTTGTGGACACACAATACAGTTCAAGCAACAATGTACAAACCGTTAAAATGGTGCTATAAAGTGTCCCGCTGGCTGGTGGCTTTTCTTAACTTCTCCTGTTTGTGGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43456 lncRNA upstream 4977 17818146 ~ 17818416 (+) True G29331
TU43425 lncRNA upstream 5460 17817546 ~ 17817933 (+) True G29317
TU43408 lncRNA upstream 77076 17745528 ~ 17746317 (+) True G29306
TU43407 lncRNA upstream 83726 17738067 ~ 17739667 (+) True G29305
XR_006250674.1 lncRNA upstream 111682 17710055 ~ 17711711 (+) True LOC122343158
TU43463 lncRNA downstream 127 17823898 ~ 17824265 (+) False G29334
TU43454 lncRNA downstream 30690 17854461 ~ 17855364 (+) True G29329
TU43440 lncRNA downstream 60557 17884328 ~ 17965751 (+) True G29320
TU43441 lncRNA downstream 60557 17884328 ~ 17965751 (+) False G29320
TU43427 lncRNA downstream 92283 17916054 ~ 17919610 (+) True G29318
XM_043237278.1 mRNA upstream 11930 17805840 ~ 17811463 (+) True LOC122343009
XM_043236807.1 mRNA upstream 157496 17644435 ~ 17665897 (+) True kdr
XM_043236808.1 mRNA upstream 192571 17582070 ~ 17630822 (+) True clocka
XM_043237493.1 mRNA downstream 77670 17901441 ~ 17902917 (+) True oxt
XM_043237498.1 mRNA downstream 88668 17912439 ~ 17915594 (+) True fabp1a
XM_043237496.1 mRNA downstream 88670 17912441 ~ 17915435 (+) False fabp1a
XM_043237497.1 mRNA downstream 88670 17912441 ~ 17915435 (+) False fabp1a
XM_043237406.1 mRNA downstream 109534 17933305 ~ 17937916 (+) True exosc2
TU42966 other upstream 1349012 16473898 ~ 16474381 (+) True G28982
TU42861 other upstream 1837667 15985219 ~ 15985726 (+) True G28899
TU42853 other upstream 1981538 15841372 ~ 15841855 (+) True G28891
TU42722 other upstream 2168212 15650295 ~ 15655181 (+) True cdkn1d
TU42701 other upstream 2267711 15439334 ~ 15555682 (+) True G28806
TU43729 other downstream 476644 18300415 ~ 18301189 (+) True G29526
TU43756 other downstream 612689 18436460 ~ 18461317 (+) True G29545
TU43926 other downstream 1059408 18883179 ~ 18886402 (+) True G29642
TU44195 other downstream 1466449 19290220 ~ 19342911 (+) True G29814
TU44225 other downstream 1907491 19731262 ~ 19786128 (+) False G29835

Expression Profile