RNA id: TU43761


Basic Information

Item Value
RNA id TU43761
length 1572
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G29548
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 18441631 ~ 18465837 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttttgtaaatcttgtttgatctgctgtaagcATAACTCACAGGGAAACTGCAGgcctaagagaggtcaatttcaaagccagactaccttttcagtttatccacatggattttattgaactgacaccttgctaacagtacaaatactgtacgttcagtttaccgctgtgtgatgatgtgtgtgagaaaccacaagagcagcatacactagcagagtggatgaacaaaatgttgaaatttaaaatgtttgaaatgttgtgagagcaaatgatctgccagatattcctctgtccccacaggtctcaagagtgaaaccaggcgacagcatcctgatTAAAGCAACGTGGTGCTGACTACCCCAACTGCCTTGAAGACCGCTGAGAGGTCTACGTGGATTCATCAGAGCCACTGTACAAAGGTCACAGAGTTTCCTGCCTAAACCGACGAGTATGGGTGTGAAGTCCGGTTACAAAGGGTGGTGAAGGCAATAGGCCTCGCTGGTCTCAACCGGTGAAGAAACCAACAGAGCCCTACTCATTTTTAGCATGGCGTGGAGTCCTGCTGTGGATGGatgcggaggagagagagacgatTAAAGGGAAACTGAAACTAAGTGAATTTTGACTGGTTCatagaacaacatgaactaaagactcattttgatttgaacatgtttatgcatgatctgtgttttaccatgtttaagggcaatgattactaaaatgattagccagacttttccagttttaccatgcttctccaccaagagagaaacGGAGAGCTTTAAGTATCATgtgtgaagtctcagttaaaaccacagctgtgatatggctgagtgctgatgttatgatacaaaaggtacactgataagctacagtagccgtgctgagaacaagaggcaccgttttatttcattcttccttttcagtttattttcacattttcctcctatgttcatgctttaaattttatgttgtatacattatgattaagatgcaagccttacaggtgatcgcccatgtaacatcttgggggtcggttgggaatttttcctcagatactggggttttcgcccaaccttgctgtttcaagtaagcatcgactatgtaatcaagtaatcagtagagatgtagtttaatatgcatatgttatttttcaggtgctaaAACGTCAAACAGGAGGAATATGTTagagttatgtattgacattttgaaatctcgacccttcagtttcagctttcatcgggtgccaggctttgtcagcttggtctgaacggaatgttggagttaaatgttgacagttatgcacctgtaggtttttaatttctgtttgatCCTTGGTCATGACATGACCTCTGcataatactgatagggccaccggaagaatctgaaggagtgaagactCTGACGCACGAGAGAAgttgccaattgttttcatttactgtatcttgtctttttctctataaataaagcgacttgcaatctgagcttcggagacaaaagggaggttaaggagaaacctgcttctctcccgcttgcaatcgacagcacaatctttgcaagccttaaaatcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43674 lncRNA upstream 380715 18059335 ~ 18060916 (+) True G29484
TU43659 lncRNA upstream 439152 17999597 ~ 18002479 (+) True G29476
TU43661 lncRNA upstream 440391 17999597 ~ 18001240 (+) False G29476
TU43518 lncRNA upstream 509227 17931884 ~ 17932404 (+) True G29364
TU43430 lncRNA upstream 518742 17920709 ~ 17922889 (+) False G29318
XR_006250718.1 lncRNA downstream 125610 18591447 ~ 18594116 (+) True LOC122343196
TU43831 lncRNA downstream 134591 18600428 ~ 18603316 (+) True G29591
TU43851 lncRNA downstream 197023 18662860 ~ 18665083 (+) True G29600
TU43888 lncRNA downstream 319208 18785045 ~ 18785246 (+) True G29627
TU43902 lncRNA downstream 349046 18814883 ~ 18815278 (+) True G29633
XM_043237485.1 mRNA upstream 219311 18218716 ~ 18222320 (+) True LOC122343129
XM_043237484.1 mRNA upstream 220374 18218716 ~ 18221257 (+) False LOC122343129
XM_043237386.1 mRNA upstream 230738 18202735 ~ 18210893 (+) True lman2la
XM_043237237.1 mRNA upstream 443973 17984993 ~ 17997658 (+) True ddx54
XM_043237201.1 mRNA upstream 478112 17939684 ~ 17963519 (+) True abl1
XM_043237471.1 mRNA downstream 81694 18547531 ~ 18554389 (+) True rab21
XM_043237231.1 mRNA downstream 90732 18556569 ~ 18565366 (+) True trim24
XM_043237233.1 mRNA downstream 90732 18556569 ~ 18565366 (+) False trim24
XM_043237232.1 mRNA downstream 90734 18556571 ~ 18565366 (+) False trim24
XM_043237271.1 mRNA downstream 153714 18619551 ~ 18622911 (+) False LOC122343002
TU43729 other upstream 140442 18300415 ~ 18301189 (+) True G29526
TU42966 other upstream 1967250 16473898 ~ 16474381 (+) True G28982
TU42861 other upstream 2455905 15985219 ~ 15985726 (+) True G28899
TU42853 other upstream 2599776 15841372 ~ 15841855 (+) True G28891
TU42722 other upstream 2786450 15650295 ~ 15655181 (+) True cdkn1d
TU43926 other downstream 417342 18883179 ~ 18886402 (+) True G29642
TU44195 other downstream 824383 19290220 ~ 19342911 (+) True G29814
TU44225 other downstream 1265425 19731262 ~ 19786128 (+) False G29835
TU44230 other downstream 1279904 19745741 ~ 19747442 (+) False LOC122343071
TU44267 other downstream 1572101 20037938 ~ 20040195 (+) False LOC122343063

Expression Profile