RNA id: TU43851


Basic Information

Item Value
RNA id TU43851
length 2188
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G29600
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 18662860 ~ 18665083 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TACGTGTTAACAGATATAACTTTTATTGTTGCAAGTACATTTACAAATCttactttttcagaattatattttaaatagcataatacatttgtaaaacatAGAAACGAGCAATACACGAGTGGATATAATGTTTTCACCTTCCCCGCTCGGGTTTCAAATGTAGTAATTCACAGTAGAAGTGATAGCTTCAGTGTGCAAGTGATTTCAGCTTTACTCCCAAACACAGGGCCAGCTCACTCTTCTGAATCATCCCGTCTTTATTCACATCGCAGTGGAGCAGCAGAACCTCGCGCAGTTTATCCAGATCCCTTCCACTGATACTTGGctgagagaaagaagaaagtggTGGAATACAGAGGAAAGTGACAATTATTAGTTGTATCGTAGCAGGCTTTTGCGTTTTTTAATCAGtcaatacataaatacattctgGTCTACAGCGCAAGCTATAAAGCTTAAGTTCTTTGACCCTACTCCTGGGGAccctgcaaagttcagctccatcCTGGATCAAACACCCGAGGCCGGCTATTTGAGGTCTTCACCATGAAAATAAACTTTCCAGGACGGTGGGTCCCCAGGATCAGGTTTAAAGACCTACGAGTTACGCGTTTAATACTGAAGGTTATGGACCCAAATagattaaaacaagaaaatgaaaatttagcAGTAGCTAATTCCTTAGAATCTGTCAGAGACGTGCAAGTTCGGGTTTGTTAGAAATCTCGAGACTTATAGCGTAGTCGCTTACCCTGACGAGCTCCATCATGTCTTTGACAAACCCATCCACCTCTGGTCCTTCAAGGGCTCCGGTCTTGCTCTAGAAAGAGAGCCGAACTTTTAAGAGCTGGAACTGCTTTGTCAGTGCGTTAGGTTTGTGATCCGTGAGGTTAGCTGATTAGCGCGTCTGCTTAGCCGCCTTTGCTATTAGCAGTTTTGGAAAGTTTGGGATTTTTGGTTTGCCAATGACCAGTTCTGTCGTGACTCTCAGCGGTATCGATAGATTCAGGAGAGAACCGTGAGACATTCGAAAAATCACAGAATCGGTCTATTAATCAATTTAGCGTTACACCGCTAATGTTAGAtgtatacaggtggagctggggaaggtggagggctTCTGAACCATTTGATGATATCATTACGTCAGATTGAGTTTGATCTGTCGAACAGCACCAACTAGAGTCTCATGCCAGAATGTTGGATTTCTTTCTATTTGAGGGCTTTAAAAATTGGGCTTTCAACCGGTAGTTTTTAACAACAGTAGCAAGGTTAAATCATTCTTACAACATCATAATGCGCAAAGATCTTCTCAAAGTCTCTGTTTCTCTCCTCTTGACTGTCGTCCTGAAGAAGGCAGGAAATAAAGGGGGCATCATGCATTTGCTTgcagcaaattattacatttagaatCACAAAAGGTTAAATGAATTAGATAGAAATTACTAACATCCATTTTGAACTGCAAAAGGAAGTTGTCTTGCAGAGCCAGAATTCTGGGGAGGATTAACATCGAACTGGCTTGAGGTGATTTACGACACTGTTGCCTTCTGTAGGTCTGTTTTATCTCAATTTGAGCTAATCTATAACTATTGGATTTTCCATTAAAGAACGCTACCGTGAAGCTGCTTTGAGGCAATCTTGACCTGAATGGTGCACTTTACTGCCATCAAACTTTCTCAAATTTGTTGTCACTACACCACAATGATAATTTCACATGCCTGAACCCAGACAGCCCATGTacgtctgcaagatgtctgttaaagatctctttGGCTGTCCACAGACGTCTTGCGGATGTCGGTTTCACGTACATTCTAAATcctaaacatcttaaagacatctaatagACGTCTATTTGACATCTAAAAGGAGACGTCCAATAGATGATAAATATAGAGTATTAATTTGTCAGCTGTGTGTTTCTGCCAGCCAATCTACACTGATTCTAATACGTGACTGATTCGACTTAGGCAGCACAAATCATACAAACGTTAAACAAGCCAGCATAAATATACTTCTTGAATTAATAATGTGTTAGAAAAGAGTCTTTGTTTTTAACACAATCATACACACAAAGACCCATTCTCACCATCAAGGCCTAAAAAGCTCCACAAGCACAGAACAAAACCACTATTGTTAACTGTTACATTACAATTAACGCAAGTTATGTAACCGGATTACTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43831 lncRNA upstream 59544 18600428 ~ 18603316 (+) True G29591
XR_006250718.1 lncRNA upstream 68744 18591447 ~ 18594116 (+) True LOC122343196
TU43761 lncRNA upstream 197023 18441631 ~ 18465837 (+) True G29548
TU43755 lncRNA upstream 202265 18435643 ~ 18460595 (+) True G29544
TU43674 lncRNA upstream 601944 18059335 ~ 18060916 (+) True G29484
TU43888 lncRNA downstream 119962 18785045 ~ 18785246 (+) True G29627
TU43902 lncRNA downstream 149800 18814883 ~ 18815278 (+) True G29633
XR_006250682.1 lncRNA downstream 238152 18903235 ~ 18907824 (+) True LOC122343164
TU44148 lncRNA downstream 267236 18932319 ~ 18932690 (+) True G29777
TU44169 lncRNA downstream 302304 18967387 ~ 18967714 (+) True G29797
XM_043236044.1 mRNA upstream 7755 18646798 ~ 18655105 (+) True LOC122342234
XM_043237266.1 mRNA upstream 15932 18634109 ~ 18646928 (+) True si:ch211-166e11.5
XM_043237265.1 mRNA upstream 30423 18627425 ~ 18632437 (+) True LOC122343000
XM_043237264.1 mRNA upstream 30423 18628328 ~ 18632437 (+) False LOC122343000
XM_043237268.1 mRNA upstream 35589 18619942 ~ 18627271 (+) False LOC122343002
XM_043236045.1 mRNA downstream 93471 18758554 ~ 18782810 (+) True LOC122342235
XM_043237430.1 mRNA downstream 140367 18805450 ~ 18809963 (+) False LOC122343102
XM_043237434.1 mRNA downstream 140368 18805451 ~ 18809963 (+) False LOC122343102
XM_043237431.1 mRNA downstream 141049 18806132 ~ 18809963 (+) True LOC122343102
XM_043237432.1 mRNA downstream 141135 18806218 ~ 18809963 (+) False LOC122343102
TU43756 other upstream 201543 18436460 ~ 18461317 (+) True G29545
TU43729 other upstream 361671 18300415 ~ 18301189 (+) True G29526
TU42966 other upstream 2188479 16473898 ~ 16474381 (+) True G28982
TU42861 other upstream 2677134 15985219 ~ 15985726 (+) True G28899
TU42853 other upstream 2821005 15841372 ~ 15841855 (+) True G28891
TU43926 other downstream 218096 18883179 ~ 18886402 (+) True G29642
TU44195 other downstream 625137 19290220 ~ 19342911 (+) True G29814
TU44225 other downstream 1066179 19731262 ~ 19786128 (+) False G29835
TU44230 other downstream 1080658 19745741 ~ 19747442 (+) False LOC122343071
TU44267 other downstream 1372855 20037938 ~ 20040195 (+) False LOC122343063

Expression Profile