RNA id: TU43953


Basic Information

Item Value
RNA id TU43953
length 472
lncRNA type sense_over
GC content 0.49
exon number 2
gene id G29662
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 18435645 ~ 18465837 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tggattttaaggcttgcaaagattgtgctgtcgattgcaagcgggagagaagcaggtttctccttaacctcccttttgcctccagacggatctcagtccgcctgaggccgggggccgggcaggcccccgccttctgcctccttccctgctttgcctcctccgtTTGCCTCCTCCGacgctcagatcgcaagtcactttatttatagaggaaaggacaagatacagtaaatgaaaacaattggccacatttcttgtgcgtcagaatcttcactccttcagattcttccggtggccctatcagtattctacggaggccatgttatgaccaagaatcaaactgaaactaaaaggccacaggtgcataactgtcaacatttaactccaacattccgttctcatcaggctgacaaagcctggcacccgatggaagctgtaactgaaggatcaaagttgcaaaatgtcaatacataac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43946 lncRNA downstream 25750 18380990 ~ 18409895 (-) True G29656
TU43679 lncRNA downstream 449827 17985013 ~ 17985818 (-) True G29487
TU43635 lncRNA downstream 494856 17873152 ~ 17940789 (-) True G29457
XR_006250690.1 lncRNA downstream 605702 17828586 ~ 17829943 (-) True LOC122343170
TU43617 lncRNA downstream 611381 17823423 ~ 17824264 (-) True G29445
TU43984 lncRNA upstream 90663 18556500 ~ 18558268 (-) False G29680
TU43982 lncRNA upstream 90787 18556624 ~ 18558268 (-) False G29680
TU43983 lncRNA upstream 90787 18556624 ~ 18559281 (-) True G29680
TU43986 lncRNA upstream 90787 18556624 ~ 18558268 (-) False G29680
TU43989 lncRNA upstream 97317 18563154 ~ 18564445 (-) True G29682
XM_043237506.1 mRNA downstream 4211 18375327 ~ 18431434 (-) True LOC122343150
XM_043237480.1 mRNA downstream 217117 18213547 ~ 18218528 (-) True wbp1
XM_043237489.1 mRNA downstream 233514 18199050 ~ 18202131 (-) True mtfp1
XM_043237372.1 mRNA downstream 239124 18193309 ~ 18196521 (-) True LOC122343062
XM_043237255.1 mRNA downstream 368480 18059325 ~ 18067165 (-) True tbx3a
XM_043237252.1 mRNA upstream 60169 18526006 ~ 18544653 (-) False ptprr
XM_043237251.1 mRNA upstream 60169 18526006 ~ 18544653 (-) True ptprr
XM_043237356.1 mRNA upstream 102326 18568163 ~ 18571675 (-) True LOC122343050
XM_043236043.1 mRNA upstream 105868 18571705 ~ 18579003 (-) True LOC122342233
XM_043237345.1 mRNA upstream 113814 18579651 ~ 18583442 (-) False LOC122343042
TU43941 other downstream 7302 18408560 ~ 18428343 (-) True G29653
TU43653 other downstream 455723 17970605 ~ 17979922 (-) True G29473
TU43577 other downstream 699371 17735350 ~ 17736274 (-) True G29417
TU43541 other downstream 796936 17637159 ~ 17638709 (-) False srd5a3
TU43209 other downstream 1313516 17118628 ~ 17122129 (-) True xrcc3
XR_006250671.1 other upstream 191143 18656980 ~ 18661653 (-) True LOC122343054
XR_006250670.1 other upstream 191143 18656980 ~ 18661649 (-) False LOC122343054
TU44045 other upstream 258988 18724825 ~ 18735640 (-) False LOC122342944
TU44133 other upstream 434728 18900565 ~ 18902548 (-) False LOC122343082
XR_006250672.1 other upstream 450489 18916326 ~ 18917533 (-) True LOC122343130

Expression Profile