RNA id: XM_043237162.1


Basic Information

Item Value
RNA id XM_043237162.1
length 5299
RNA type mRNA
GC content 0.46
exon number 38
gene id LOC122342944
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 18693002 ~ 18735640 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tagtcacgGTCTTCCCACATTTATAAGTGAAGGCAGTGATCAGATTCTGGCAATAGCTTTTCTGGTAAAGCTGCTGAAGAGAGAATCTCCCTGAGGTTGTTCTGCTCCGCATTTACCTCTGGTGCAGGAGGTCCAGTTTCTCACAATGAGATTTCCGATGTTACCGTGTGTGGCTCTACTGCTGCTGGGAATAATAATCAATGGACAGCCACCAGTAACAGCAGTACTGAATACGACTACCTCACAGCCAGGAGTCAGTGATATCAAGTTGGTGAACGGTCCCAATCTATGTTCTGGAAGAGTGGAGGTTTTCCACAATGGAATCTGGGGAACAGTGTGTGATGATTTCTGGGATGCTACAGACGCGGCAGTGGTGTGTAGAGAACTGGGCTGTGGGATTGCTGTAGAGGCAAAGAGCAATGCTTATTTTGGACAAGGTTCTGGACAGATATGGTTGGATGATGTTCAGTGCCGTGGGAATGAACCTACACTGAGAAACTGTTCATCAAGAGGATGGGGTTTACATGACTGTGGGCACAATGAAGATGCTGGAGTTATCTGCCAAGGCCAGCCACAAACAAGTACAGCACCATCGACAGTAACAGCAGTACTGAATACGACTACCTCACAGCCAGGAGTCAGTGATATCAAGTTGGTGAACGGTCCCAATCTATGTTCTGGAAGAGTGGAGGTTTTCCACAATGGAATCTGGGGAACAGTGTGTGATGATTTCTGGGATGCTACAGACGCGGCAGTGGTGTGTAGAGAACTGGGCTGTGGGATTGCTGTAGAGGCAAAGAGCAATGCTTATTTTGGACAAGGTTCTGGACAGATATGGTTGGATGATGTTCAGTGCCGTGGGAATGAACCTACACTGAGAAACTGTTCATCAAGAGGATGGGGTTTACATGACTGTGGGCACAATGAAGATGCTGGAGTCATCTGCCAAGGCCAGCCACAAACAAGTACAGCACCATCGACAGTAACAGCAGTACTGAATATGACTACCTCACAGCCAGGAGTCAGTGATATCAAGTTGGTGAACGGTCCCAATCTATGTTCTGGAAGAGTGGAGGTTTTCCACAATGGAATCTGGGGAACAGTGTGTGATGATTTCTGGGATGCTACAGACGCGGCAGTGGTGTGTAGAGAACTGGGCTGTGGGATTGCTGTAGAGGCAAAGAGCAATGCTTATTTTGGACAAGGTTCTGGACAGATATGGTTGGATGATGTTCAGTGCCGTGGGAATGAACCTACACTGAGAAACTGTTCATCAAGAGGATGGGGTTTACATGACTGTGGGCACAATGAAGATGCTGGAGTCATCTGCCAAGGCCAGCCACAAACAAGTACAGCACCATCGACAGTAACAGCAGTACTGAATACGACTACCTCACAGCCAGGAGTCAGTGATATCAAGTTGGTGAACGGTCCCAATCTATGTTCTGGAAGAGTGGAGGTTTTCCACAATGGAATCTGGGGAACAGTGTGTGATGATTTCTGGGATGCTACAGACGCGGCAGTGGTGTGTAGAGAACTGGGCTGTGGGATTGCTGTAGAGGCAAAGAGCAATGCTTATTTTGGACAAGGTTCTGGACAGATATGGTTGGATGATGTTCAGTGCCGTGGGAATGAATCTTTACTGAGAAACTGTTCATCAAGAGGATGGGGTTTACATGACTGTGGGCACAATGAAGATGCTGGAGTCATCTGCCAAGTAACAGCAGTACTGAATACGACGACCTCACAGCCAGGAGTCAGTGATATCAAGTTGGTGAACGGTCCCAATCTATGTTCTGGAAGAGTGGAGGTTTTCCACAATGGAATCTGGGGAACAGTGTGTGATGATTTCTGGGATGCTACAGACGCGGCAGTGGTGTGTAGAGAACTGGGCTGTGGGATTGCTGTAGAGGCAAAGAGCAATGCTTATTTTGGACAAGGTTCTGGACAGATATGGTTGGATGATGTTCAGTGCCGTGGGAATGAATCTTTACTGAGAAACTGTTCATCAAGAGGATGGGGTTTACATGACTGTGGGCACAATGAAGATGCTGGAGTCATCTGCCAAGGCCAGCCACAAACAAGTACAGCACCATTGACAGTAACAGCAGTACTGAATACGACTACCTCACAGCCAGGAGTCAGTGATATCAAGTTGGTGAACGGTCCCAATCTATGTTCTGGAAGAGTGGAGGTTTTCCACAATGGAATCTGGGGAACAGTGTGTGATGATTTCTGGGATGCTACAGACGCGGCAGTGGTGTGTAGAGAACTGGGCTGTGGAATTGCTGTAGAGGCAAAGAGCAATGCTTATTTTGGACAAGGTTCTGGACAGATATGGTTGGATGATGTTCAGTGCCGTGGGAATGAACCTACACTGAGAAACTGTTCATCAAGAGGATGGGGTTTACATGACTGTGGGCACAATGAAGATGCTGGAGTCATCTGCCAAGGCCAGCCACAAACAAGTACAGCACCATCGACAGTAACAGCAGTACTGAATACGACGACCTCACAGCCAGGAGTCAGTGATATCAAGTTGGTGAACGGTCCCAATCTATGTTCTGGAAGAGTGGAGGTTTTCCACAATGGAATCTGGGGAACAGTGTGTGATGATTTCTGGGATGCTACAGACGCGGCAGTGGTGTGTAGAGAACTGGGCTGTGGGATTGCTGTAGAGGCAAAGAGCAATGCTTATTTTGGACAAGGTTCTGGACAGATATGGTTGGATGATGTTCAGTGCCGTGGGAATGAACCTACACTGAGAAACTGTTCATCAAGAGGATGGGGTTTACATGACTGTGGGCACAATGAAGATGCTGGAGTCATCTGCCAAGGCCAGCCACCAACAAGTACAGCACCATCGACAGTAACAGCAGTACTGAACATGACTACCTCACAGCCAGGATTCAGTGATATCAAGTTGGTGAACGGTCCCAATCTATGTTCTGGAAGAGTGGAGGTTTTCCACAATGGAATCTGGGGAACAGTGTGTGATGATTTCTGGGATGCTACAGACGCGGCAGTGGTGTGTAGAGAACTGGGCTGTGGGATTGCTGTAGAGGCAAAGAGCAATGCTTATTTTGGACAAGGTTCTGGACAGATATGGTTGGATGATGTTCAGTGCCGTGGGAATGAATCTTCACTGAGAAACTGTTCATCAAGAGCATGGGGATCACATGACTGTGGGCACAATGAAGATGCAGGAGTCATCTGCCAAGGCCAGGCACAAACAAGCACACCACCAACGGCAGTAACAGCAGTACTTAACACGACTACCTCACTGCCAGGATTCAGTGCCATCAAGTTGGTGAACGGTCCCAATCTATGTTCTGGAAGAGTGGAGGTTCTCTACAATGGAATCTGGGGAACAGTGTGTGATGATTTCTGGGATGCTACAGACGCGGCAGTGGTGTGTAGAGAACTGGGCTGTGGGATTGCTGTAGAGGCAAAGAGCAATGCTTATTTTGGACAAGGTTCTGGACAGATATGGTTGGATGATGTTCAGTGCCGTGGGAATGAATCTTCACTGAGAAACTGTTCATCAAGAGGATGGGGATCACATAATTGTGGGCACAATGAAGATGCTGGAGCCATCTGCCAAGTAACAGCAGTACCGAACACGACTACCTCACAGCCAGGAGTCAGTGCTATCAAGTTGGTGAACGGTCCCAATCTATGTTCTGGAAGAGTGGAGGTTTTCCACAATGGAATCTGGGGAACAGTGTGTGATGATTTCTGGGATGCTACAGACGCGGCAGTGGTGTGTAGAGAACTGGGCTGTGGGATTGCTGTAGAGGCAAAGAGCAATGCTTATTTTGGACAAGGTTCTGGACAGATATGGTTGGATGATGTTCAGTGCAGTGGGAATGAATCTTCACTGAGAAACTGTTCATCAAGAGGATGGGGATCACATAATTGTGGGCACAATGAAGATGCTGGAGTCATCTGCCAAGCTTTCAGTGACCCTTGTTCTGAGCTCAACTGCACTGAACATGAATGGTGTGGAGAGAAAAATGGAGTTTATGGCTGTTTCTGTAACGAGAGTCATAGAAGACATGACCCAGACTCATTTGATTTCTCTGAGGTTTGTGAAAGCAGCTCTGGATCCATGTCTCTGTCTCGTTGTCAACTCTTTGAGGCTGGTTTTGCTATTAACAATTTACACCTCAATGACCCCAGCTGCAGAGGAACAGTCTGGAATGGCAGGGTGGAGTTTTATTTTGACAACAATGAACACATCTGTGGTACAAGTCTTGTGGCCAATGGCACCCATTTCATGTATGAGAACTTCATTTTTGGAACTTCAGGCTCAACTGAAGGTCCCATCAGCAGGAAGAAAATTCTGAAGCTAAATTTCAACTGTATATATCCCCAAACCCAAACACTTTCTATGAATATGGAAATCAATCCACTAGAGAGCATTGTCCACAAGAAGCTTCCTGCAGGTCAAGGGAGATATCAGGTCAGGATGGTTCCATTTCAGGATGCAGGGTTTTCCCAGTTCTTCAATGGAAGTGTAAATGTGGAAGTGAATCAGCAGATATTTGTGGAAATTCGTGTTGAGGGGGTTGATAGCCGTCAGTTTGCCACAGTGATTGACAAATGTTGGGCGACACCTGAGAATGATCCTCAACACTCTGTGCACTGGGACCTTATCAGTGGAGAGTGTCCGAGTCCAAACGATGAGACAGTGCAGCTGCTGCAGAATGGAGTTTCCGTATCCAGCCATTTCTCTTTCAGGATGTTTGTCTTCAGTGCAAACTCCACAAAGGTTTACCTGCACTGTACTGTTTACCTTTGCCTTCTGACAAGAAATCACTGCTTAACTCAATGCGACTCTGGATCCCACTGGAGAGAGAGCAGGTCTGCAGAATTCCACGACAGTGCTTCCCTTTCCATGGGTCCCCTAATGTTGTCTGAGAGGAATTAAGATAATAAGGCCCTGTGCAACAGAAGATATCTACGGCTtctgctAAGCGTTCTGATTGTTTTCTATCAtctactttatattttttcaaagaatattccttgttttatatatttctcaaaTCTCTCTAATGAATGCGATACTACCTTGCTACAATATAATGCAAATCATGCTCTTAagatacttttttgtttttttagtaaattctgtttttcaaaCCAGCACATATATATTGTTCATTATGAAGTGCATTATTATGGGAGCCATTTGGTCCAAATAACGTGTTTAATGTGTGGGGTACAATCATTTTATGCAGGCATAATTCTCTTTATCTATgctataatacaaataaacaaacattgtaTTGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43989 lncRNA downstream 128557 18563154 ~ 18564445 (-) True G29682
TU43983 lncRNA downstream 133721 18556624 ~ 18559281 (-) True G29680
TU43984 lncRNA downstream 134734 18556500 ~ 18558268 (-) False G29680
XR_006250719.1 lncRNA upstream 2218 18737815 ~ 18740781 (-) True LOC122343197
TU44083 lncRNA upstream 9004 18744601 ~ 18747308 (-) True G29726
TU44096 lncRNA upstream 48008 18783605 ~ 18783915 (-) True G29736
TU44098 lncRNA upstream 50599 18786196 ~ 18786692 (-) True G29738
TU44101 lncRNA upstream 65307 18800904 ~ 18806668 (-) True G29741
XM_043237422.1 mRNA downstream 24193 18662858 ~ 18668809 (-) True scgn
XM_043237360.1 mRNA downstream 31352 18655244 ~ 18661650 (-) False LOC122343054
XM_043237172.1 mRNA downstream 88692 18594319 ~ 18604310 (-) True LOC122342949
XM_043237173.1 mRNA downstream 88692 18594329 ~ 18604310 (-) False LOC122342949
XM_043237347.1 mRNA downstream 101615 18587664 ~ 18591387 (-) False LOC122343043
XM_043237235.1 mRNA upstream 101021 18836618 ~ 18840716 (-) True LOC122342979
XM_043237215.1 mRNA upstream 108350 18843947 ~ 18852626 (-) True LOC122342975
XM_043237400.1 mRNA upstream 163210 18898807 ~ 18902552 (-) False LOC122343082
XM_043237399.1 mRNA upstream 163210 18898807 ~ 18902498 (-) True LOC122343082
XM_043237486.1 mRNA upstream 180729 18916326 ~ 18917533 (-) False LOC122343130
XR_006250671.1 other downstream 31349 18656980 ~ 18661653 (-) True LOC122343054
XR_006250670.1 other downstream 31353 18656980 ~ 18661649 (-) False LOC122343054
TU43941 other downstream 264659 18408560 ~ 18428343 (-) True G29653
TU43653 other downstream 713080 17970605 ~ 17979922 (-) True G29473
TU43577 other downstream 956728 17735350 ~ 17736274 (-) True G29417
TU44133 other upstream 164968 18900565 ~ 18902548 (-) False LOC122343082
XR_006250672.1 other upstream 180729 18916326 ~ 18917533 (-) True LOC122343130
TU44159 other upstream 195939 18931536 ~ 18931875 (-) True G29787
unassigned_transcript_306 other upstream 1324992 20060589 ~ 20060671 (-) True trnal-aag
unassigned_transcript_307 other upstream 1325755 20061352 ~ 20061432 (-) True trnal-cag

Expression Profile