RNA id: TU44096


Basic Information

Item Value
RNA id TU44096
length 311
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G29736
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 18783605 ~ 18783915 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGTTTTctacaatataatgtaatgccTTTTGGGGTCAAAAATGCTCCCACTACATTTCAGTGATTGGTAAACTGAGTATTGTCTGAGTTGGCTGGATGTGAAGCCTACCTAGACAATGTTGTTTTGTATAGTTCTTCTTGGTTAGAACATTTCATACAAATTCAAGATCTTTTTGAGCGGTTGTCTAAAGCTATTTTGACTATCAATCTCACCAAATGTGAATTTGGAAAGGCCACTGTGACTTATTTAAGCAAAGTTGTTGGCCAGGGTTGTATAAAACCTATCAATGCCAAAATTGACGAGAATTGCTC

Function

GO: NA

KEGG:

id description
ko05332 Graft-versus-host disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44083 lncRNA downstream 36297 18744601 ~ 18747308 (-) True G29726
XR_006250719.1 lncRNA downstream 42824 18737815 ~ 18740781 (-) True LOC122343197
TU44075 lncRNA downstream 71502 18711748 ~ 18712103 (-) True G29720
TU43989 lncRNA downstream 219160 18563154 ~ 18564445 (-) True G29682
TU43983 lncRNA downstream 224324 18556624 ~ 18559281 (-) True G29680
TU44098 lncRNA upstream 2281 18786196 ~ 18786692 (-) True G29738
TU44101 lncRNA upstream 16989 18800904 ~ 18806668 (-) True G29741
TU44114 lncRNA upstream 73559 18857474 ~ 18857721 (-) True G29753
XR_006250724.1 lncRNA upstream 73972 18857887 ~ 18861170 (-) True LOC122343202
XR_006250707.1 lncRNA upstream 172303 18956218 ~ 18958048 (-) True LOC122343185
XM_043237165.1 mRNA downstream 48007 18693002 ~ 18735598 (-) False LOC122342944
XM_043237162.1 mRNA downstream 48008 18693002 ~ 18735597 (-) False LOC122342944
XM_043237164.1 mRNA downstream 48008 18693002 ~ 18735597 (-) False LOC122342944
XM_043237167.1 mRNA downstream 48008 18693002 ~ 18735597 (-) False LOC122342944
XM_043237163.1 mRNA downstream 48008 18693002 ~ 18735597 (-) False LOC122342944
XM_043237235.1 mRNA upstream 52703 18836618 ~ 18840716 (-) True LOC122342979
XM_043237215.1 mRNA upstream 60032 18843947 ~ 18852626 (-) True LOC122342975
XM_043237400.1 mRNA upstream 114892 18898807 ~ 18902552 (-) False LOC122343082
XM_043237399.1 mRNA upstream 114892 18898807 ~ 18902498 (-) True LOC122343082
XM_043237486.1 mRNA upstream 132411 18916326 ~ 18917533 (-) False LOC122343130
TU44045 other downstream 47965 18724825 ~ 18735640 (-) False LOC122342944
XR_006250671.1 other downstream 121952 18656980 ~ 18661653 (-) True LOC122343054
XR_006250670.1 other downstream 121956 18656980 ~ 18661649 (-) False LOC122343054
TU43941 other downstream 355262 18408560 ~ 18428343 (-) True G29653
TU43653 other downstream 803683 17970605 ~ 17979922 (-) True G29473
TU44133 other upstream 116650 18900565 ~ 18902548 (-) False LOC122343082
XR_006250672.1 other upstream 132411 18916326 ~ 18917533 (-) True LOC122343130
TU44159 other upstream 147621 18931536 ~ 18931875 (-) True G29787
unassigned_transcript_306 other upstream 1276674 20060589 ~ 20060671 (-) True trnal-aag
unassigned_transcript_307 other upstream 1277437 20061352 ~ 20061432 (-) True trnal-cag

Expression Profile