RNA id: TU44098



Basic Information


Item Value
RNA id TU44098
length 497
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G29738
representative True

Chromosome Information


Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 18786196 ~ 18786692 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


CGATGACAAGGTTAAAGCAGTTACGGAGTGGCCTCAACCCACTACGGTCAAGGAGCTACAAcggtttctagggtttgcaaatttctaccGACGCTTCATCCGGAACTATAGTACTgttgctgcaccactaacctctctcttaaagggaaagccgTCCAAGCTGAGATGGAATGAGGGAGCAATTAAGGCGTTCTCCAACCTCAAGGaacgtttcaccacagccccAATTCTCAAACATCCTAATCCGGAGCTACCATTCATCGTGGAAGTGGATGCATCGGACTGCGGaattggagctgttctctcACAGCGTCACGGTCAACCAGGGAAACTTTATCCTTGTGCTTACTTTTCCAGGAAATTAACGGCagctgagagaaattatgacgtGGGAAACAAGGAACTGTTGTCCATGAAAGCGGCCattgaggagtggagacactggctagAAGGAGCAGTGCATCCGTTCCAAGTCATCACGGACCACAAGAACCTGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU44096 lncRNA downstream 2281 18783605 ~ 18783915 (-) True G29736
TU44083 lncRNA downstream 38888 18744601 ~ 18747308 (-) True G29726
XR_006250719.1 lncRNA downstream 45415 18737815 ~ 18740781 (-) True LOC122343197
TU44075 lncRNA downstream 74093 18711748 ~ 18712103 (-) True G29720
TU43989 lncRNA downstream 221751 18563154 ~ 18564445 (-) True G29682
TU44101 lncRNA upstream 14212 18800904 ~ 18806668 (-) True G29741
TU44114 lncRNA upstream 70782 18857474 ~ 18857721 (-) True G29753
XR_006250724.1 lncRNA upstream 71195 18857887 ~ 18861170 (-) True LOC122343202
XR_006250707.1 lncRNA upstream 169526 18956218 ~ 18958048 (-) True LOC122343185
TU44168 lncRNA upstream 180084 18966776 ~ 18967064 (-) True G29796
XM_043237165.1 mRNA downstream 50598 18693002 ~ 18735598 (-) False LOC122342944
XM_043237162.1 mRNA downstream 50599 18693002 ~ 18735597 (-) False LOC122342944
XM_043237164.1 mRNA downstream 50599 18693002 ~ 18735597 (-) False LOC122342944
XM_043237167.1 mRNA downstream 50599 18693002 ~ 18735597 (-) False LOC122342944
XM_043237163.1 mRNA downstream 50599 18693002 ~ 18735597 (-) False LOC122342944
XM_043237235.1 mRNA upstream 49926 18836618 ~ 18840716 (-) True LOC122342979
XM_043237215.1 mRNA upstream 57255 18843947 ~ 18852626 (-) True LOC122342975
XM_043237400.1 mRNA upstream 112115 18898807 ~ 18902552 (-) False LOC122343082
XM_043237399.1 mRNA upstream 112115 18898807 ~ 18902498 (-) True LOC122343082
XM_043237486.1 mRNA upstream 129634 18916326 ~ 18917533 (-) False LOC122343130
TU44045 other downstream 50556 18724825 ~ 18735640 (-) False LOC122342944
XR_006250671.1 other downstream 124543 18656980 ~ 18661653 (-) True LOC122343054
XR_006250670.1 other downstream 124547 18656980 ~ 18661649 (-) False LOC122343054
TU43941 other downstream 357853 18408560 ~ 18428343 (-) True G29653
TU43653 other downstream 806274 17970605 ~ 17979922 (-) True G29473
TU44133 other upstream 113873 18900565 ~ 18902548 (-) False LOC122343082
XR_006250672.1 other upstream 129634 18916326 ~ 18917533 (-) True LOC122343130
TU44159 other upstream 144844 18931536 ~ 18931875 (-) True G29787
unassigned_transcript_306 other upstream 1273897 20060589 ~ 20060671 (-) True trnal-aag
unassigned_transcript_307 other upstream 1274660 20061352 ~ 20061432 (-) True trnal-cag

Expression Profile