RNA id: XM_043237399.1


Basic Information

Item Value
RNA id XM_043237399.1
length 2736
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC122343082
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 18898807 ~ 18902552 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TATAATCGTTTAAAGCGTTTTAACGAACGCAGCCCTTCGCTTCGAGAATTAACAGGATATTTAAAGCTGTTAAGTAAATTATTGCCGAAAGCAACAGTGTCATGCTTTATATATGTTGTCACAAATTAAAGGCATTTTGTTTGGATTACAGAAACGGTCTTATTTTGTAGCCCGCATTTTGAATCGGTTTATCAAAAACGGTGCTTTTCGAAACCGAGTCAACTGAATCAGTTGCTTCATAAAACGATTCGCTGTTTTGAATCACTCGAATCAGCGCGCGCTGACGACACGTGCTGCTCAAAACAAACATGTCATAAAACTTTCTCAGACCACGTGCCAATGTTTTTATGAGAGTGGAAcctattaaatGGAAAAAGTGTccaaacaaacaggaaaaaaactcAGTTGAGTTTGACGCGGCACGCTGTTATGAAGATggcgtttattaaagaggagagtgaagacCTGAAGATCGAAGAAACGTTCAGAGTCAAACATGAAGAAACCGAGGAACACATAAAGACGgtgtttattaaagaggagaaaGAAGACGTGAAGATCGAAGAAGAGTTCAGAGTCAAGCGTGAAGATCAAACAGACCCGACGACACTGAAAGAGGAGAGTCAAGAATGTGACTCCAAACCCGGAGAAGAAGCGTTTAGTTCCTCGCAGACTGAAACGACCACCTCGCAAAAACGAGCTCGGACAAACCCAGCCACCAAGCTTGAATCCCGTGTGGGGGTCCCTTCCGGAAGGAGCTCCCTCACCTGCCGACGGCGCGGAGGAACGCTTCGGGAAAAAGCAAGCCTCAAAGTCCACGAAAAGAAGCCGATCGCGTGCGCTCAGTGCGGGAAGTGTTTCACgcagaaaaaaaacctcaacGCCCACATGcgaatccacaccggagagaggcCTTTCACCTGCGAGCTGTGCGGGAAGAGTTTTATGCGAAACGGGGGACTCAAGATTCACGCGAGAACTCACGGCGAAGACAAGCCGTTCAAGTGTTGCCGGTGCGACAAGAGCTTCGCGCTGAAAAAACTCCTCGACGCCCACACGAAGGTTCACACGGGACAGAGGCCTTTCGTCTGCCagcagtgcgggaagagcttcggCCTCAAGGGGAACCTTCAGACTCACACGAaaattcacaccggagagaatcTCTTCGAGTGCGTTCAGTGCGGGAAGGCTTTTGTGCAGAAAAAGCAACTCCGGTCCCACGTGAgcgttcacaccggagagaaaccgttcgCTTGCGACCGGTGCGGAGTGGGGTTCAGATATAAAGAAAGCCTCAATTATCACGCCAGGGTTCATTCGAGAGAGAAGGCCTTAGTGCGATTAGACAGCTAGCTTTTTCCTTTTAGCACGGATGTTCAAGACTCTACGCTGCGTTCAAATTCATGACTgactatttaaattatttgtaactTATGTATAACTTTTATACTTCACCAAAAAGTAGTTACTTTCAAATGTTGATTGGCTCTACTTTTGATTCCTCTAAAGCAAAATATCACCCAAACTTCTATCTTTGTGTCTGCCGACGATGGGTGCTCTTTAGCTTATCATTTAGTTAGAGGGGTCGTGTGGTGTTGCTGAAAAGAACGTTATTTTGTGCATAATGCAAAGTGTTTGtggtttaagtaaaaaaaactaacaaaacatgCTGTACATTGTTTCTCGTCTAAGCCCTGTCTTCTGAAACGGGTCGATTTCTACACAGCTAACTGTTCCAAAAAatgaggtgtgctctgattggacagatatccagtgtgttgtgattggccgaatacacacacacacacatatatagatagatatacacaatttaatattaacatcGCCACACTAGCACCCGTTGGTGTGTATCTACTCAAACGTACAACAAAAATTTGACTCCAATGTCTTCCACCCCTTCCACCATCTAGGATCCTGAGTAGTTGCTTTCAACAGGATTTGTTTCCTGTGCTTCTGCTTTAAATTCATCATCCAAGAAAGAGATTATTCAGACAGCACCTGAAAAACCAGACtggtttaactctaggggagatGGAAGATTAACCTGTGTTTGAAAATATTGGAGTGGTCCTTTCAGAAACGGTTAGATGCGTGGTGGTTTAACAGATTCATGCATTTCTTATATTAGCCTTAAAGGAACACACAAATCCAGACTGAGCAGACGGTTCACCTTCCAACAGGACAGTGACCCTAATCCCACAGCAAGAGTCGCTTAAAGACGACTCCCGTGAATGTTCTTGAGGGACCCAGCCACTGCCTGGGATTAAACCCAATCAGATGTtttctggagaaacctgaaCATGTGCATCTGCCCGTATCCAACCGGACCGAGCTAAACCGGACTAAAGCAGATTAACTTAAGGCAGCAacgtaaaatataaaagaaaataaataaaggggtATGAATACTATTGCAGCTACAAGGTCATTTGTATCGTTGTACTTAATGGTCTCTGAGGGCGAAGTCTCCCTAAAGATGAAATCCTCGAACCGCCCCTGCTTGAGTCAAATGGGTGTTTGGTCCTTACATAAAGACTCGgcattgatattttatataccaATGATTTACGATGAAAGGTAATGGTATGAATggtatttatcattatttcacataaaaagaGAACTTGTGATGTATACATTCGTACTTCATTTATTTGTCGATGACTGGAATGCACAAAACAACTCCAAAGGACTTCCAAACGAgtacaaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250724.1 lncRNA downstream 37637 18857887 ~ 18861170 (-) True LOC122343202
TU44114 lncRNA downstream 41086 18857474 ~ 18857721 (-) True G29753
TU44101 lncRNA downstream 92139 18800904 ~ 18806668 (-) True G29741
TU44098 lncRNA downstream 112115 18786196 ~ 18786692 (-) True G29738
TU44096 lncRNA downstream 114892 18783605 ~ 18783915 (-) True G29736
XR_006250707.1 lncRNA upstream 53720 18956218 ~ 18958048 (-) True LOC122343185
TU44168 lncRNA upstream 64278 18966776 ~ 18967064 (-) True G29796
TU44183 lncRNA upstream 143319 19045817 ~ 19053531 (-) True G29806
XR_006250721.1 lncRNA upstream 323476 19225974 ~ 19226499 (-) True LOC122343199
XR_006250705.1 lncRNA upstream 430424 19332922 ~ 19333726 (-) True LOC122343183
XM_043237215.1 mRNA downstream 46181 18843947 ~ 18852626 (-) True LOC122342975
XM_043237235.1 mRNA downstream 58091 18836618 ~ 18840716 (-) True LOC122342979
XM_043237167.1 mRNA downstream 163210 18693002 ~ 18735597 (-) False LOC122342944
XM_043237486.1 mRNA upstream 13828 18916326 ~ 18917533 (-) False LOC122343130
XM_043237328.1 mRNA upstream 20765 18923263 ~ 18927380 (-) True LOC122343034
XM_043236047.1 mRNA upstream 64763 18967261 ~ 18970537 (-) True LOC122342237
XM_043237435.1 mRNA upstream 112587 19015085 ~ 19017227 (-) True LOC122343103
XM_043236053.1 mRNA upstream 431231 19333729 ~ 19337492 (-) True LOC122342243
TU44045 other downstream 163167 18724825 ~ 18735640 (-) False LOC122342944
XR_006250671.1 other downstream 237154 18656980 ~ 18661653 (-) True LOC122343054
XR_006250670.1 other downstream 237158 18656980 ~ 18661649 (-) False LOC122343054
TU43941 other downstream 470464 18408560 ~ 18428343 (-) True G29653
TU43653 other downstream 918885 17970605 ~ 17979922 (-) True G29473
XR_006250672.1 other upstream 13828 18916326 ~ 18917533 (-) True LOC122343130
TU44159 other upstream 29038 18931536 ~ 18931875 (-) True G29787
unassigned_transcript_306 other upstream 1158091 20060589 ~ 20060671 (-) True trnal-aag
unassigned_transcript_307 other upstream 1158854 20061352 ~ 20061432 (-) True trnal-cag
unassigned_transcript_308 other upstream 1159977 20062475 ~ 20062557 (-) True trnal-aag_1

Expression Profile