RNA id: TU44148


Basic Information

Item Value
RNA id TU44148
length 372
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G29777
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 18932319 ~ 18932690 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ggacccttctgccttctgcctgccccctcctggggatccgtcctccaccagaacctcctcccaagacccggtatccccaaatcctagtcattttggttttgtttgttttcatttgatgttaccctttaggtgcgaggacgcaccttccgggagggggggggtaatgtcacatctctggactctgtgtttatgttttcgtttcatgccatgtgctccctgtgccctgccttccctctgtgttaattatgttattgtcatcagctgtgtctcgtcaattaccctgtgtatttaagtcctgtgttttgagttctgtttgtccgagcgtcgaggtccttacctgatgtctacccctgtgtttatcctgcctgcctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250682.1 lncRNA upstream 24495 18903235 ~ 18907824 (+) True LOC122343164
TU43902 lncRNA upstream 117041 18814883 ~ 18815278 (+) True G29633
TU43888 lncRNA upstream 147073 18785045 ~ 18785246 (+) True G29627
TU43851 lncRNA upstream 267236 18662860 ~ 18665083 (+) True G29600
TU43831 lncRNA upstream 329003 18600428 ~ 18603316 (+) True G29591
TU44169 lncRNA downstream 34697 18967387 ~ 18967714 (+) True G29797
TU44175 lncRNA downstream 113020 19045710 ~ 19053414 (+) True G29803
TU44189 lncRNA downstream 147078 19079768 ~ 19080189 (+) True G29809
XR_006250695.1 lncRNA downstream 437081 19369771 ~ 19371889 (+) True LOC122343175
XR_006250711.1 lncRNA downstream 473213 19405903 ~ 19406459 (+) True LOC122343189
XM_043237355.1 mRNA upstream 9809 18918600 ~ 18922510 (+) False LOC122343048
XM_043237353.1 mRNA upstream 9809 18918644 ~ 18922510 (+) True LOC122343048
XM_043237354.1 mRNA upstream 9809 18918644 ~ 18922510 (+) False LOC122343048
XM_043237213.1 mRNA upstream 17297 18908916 ~ 18915022 (+) True LOC122342974
XM_043237394.1 mRNA upstream 34529 18894901 ~ 18897790 (+) True LOC122343078
XM_043237417.1 mRNA downstream 1017 18933707 ~ 18937665 (+) True LOC122343092
XM_043237335.1 mRNA downstream 18037 18950727 ~ 18953599 (+) False LOC122343037
XM_043237337.1 mRNA downstream 18234 18950924 ~ 18953599 (+) True LOC122343037
XM_043237336.1 mRNA downstream 18234 18950924 ~ 18953599 (+) False LOC122343037
XM_043236046.1 mRNA downstream 27972 18960662 ~ 18962974 (+) True LOC122342236
TU43926 other upstream 45917 18883179 ~ 18886402 (+) True G29642
TU43756 other upstream 471002 18436460 ~ 18461317 (+) True G29545
TU43729 other upstream 631130 18300415 ~ 18301189 (+) True G29526
TU42966 other upstream 2457938 16473898 ~ 16474381 (+) True G28982
TU42861 other upstream 2946593 15985219 ~ 15985726 (+) True G28899
TU44195 other downstream 357530 19290220 ~ 19342911 (+) True G29814
TU44225 other downstream 798572 19731262 ~ 19786128 (+) False G29835
TU44230 other downstream 813051 19745741 ~ 19747442 (+) False LOC122343071
TU44267 other downstream 1105248 20037938 ~ 20040195 (+) False LOC122343063
unassigned_transcript_309 other downstream 1129964 20062654 ~ 20062727 (+) True trnam-cau_2

Expression Profile