RNA id: TU44175


Basic Information

Item Value
RNA id TU44175
length 451
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G29803
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 19045710 ~ 19053414 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTATGGgaaacatacactgtgtgcgtgaggagtgtaatggaaattattctaattgattacatttaatgtttattgttcacttttaacactgaattgaattaacttcactattaaactaactttacttaaagatagattacatatatatatattcgtaacatcacggtactaggcacgaacacagaaacatacattagtgacctggaatgttagagttatgggaaacatacactgtgtgcgtgacagaggttgaacccatgttaaaacaacctcatgggagtacaggatgccctatctgtgctaggtacgggagataaactggagaacaatcagacactgtaagcacagatgggtggcgtgactttggactatttcaattggttcgagatgaatttgagcgaccttggaatgtatacttttgcctataaaacctctaatctgtgagctcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44169 lncRNA upstream 77996 18967387 ~ 18967714 (+) True G29797
TU44148 lncRNA upstream 113020 18932319 ~ 18932690 (+) True G29777
XR_006250682.1 lncRNA upstream 137886 18903235 ~ 18907824 (+) True LOC122343164
TU43902 lncRNA upstream 230432 18814883 ~ 18815278 (+) True G29633
TU43888 lncRNA upstream 260464 18785045 ~ 18785246 (+) True G29627
TU44189 lncRNA downstream 26354 19079768 ~ 19080189 (+) True G29809
XR_006250695.1 lncRNA downstream 316357 19369771 ~ 19371889 (+) True LOC122343175
XR_006250711.1 lncRNA downstream 352489 19405903 ~ 19406459 (+) True LOC122343189
XR_006250720.1 lncRNA downstream 361047 19414461 ~ 19414983 (+) True LOC122343198
XR_006250725.1 lncRNA downstream 459659 19513073 ~ 19513595 (+) True LOC122343203
XM_043236046.1 mRNA upstream 82736 18960662 ~ 18962974 (+) True LOC122342236
XM_043237335.1 mRNA upstream 92111 18950727 ~ 18953599 (+) False LOC122343037
XM_043237337.1 mRNA upstream 92111 18950924 ~ 18953599 (+) True LOC122343037
XM_043237336.1 mRNA upstream 92111 18950924 ~ 18953599 (+) False LOC122343037
XM_043237417.1 mRNA upstream 108045 18933707 ~ 18937665 (+) True LOC122343092
XM_043236049.1 mRNA downstream 10611 19064025 ~ 19067883 (+) True LOC122342238
XM_043236050.1 mRNA downstream 93587 19147001 ~ 19150635 (+) True LOC122342239
XM_043236051.1 mRNA downstream 211941 19265355 ~ 19268050 (+) True LOC122342242
XM_043236055.1 mRNA downstream 392147 19445561 ~ 19449833 (+) True LOC122342246
XM_043236059.1 mRNA downstream 650485 19703899 ~ 19706327 (+) True LOC122342253
TU43926 other upstream 159308 18883179 ~ 18886402 (+) True G29642
TU43756 other upstream 584393 18436460 ~ 18461317 (+) True G29545
TU43729 other upstream 744521 18300415 ~ 18301189 (+) True G29526
TU42966 other upstream 2571329 16473898 ~ 16474381 (+) True G28982
TU42861 other upstream 3059984 15985219 ~ 15985726 (+) True G28899
TU44195 other downstream 236806 19290220 ~ 19342911 (+) True G29814
TU44225 other downstream 677848 19731262 ~ 19786128 (+) False G29835
TU44230 other downstream 692327 19745741 ~ 19747442 (+) False LOC122343071
TU44267 other downstream 984524 20037938 ~ 20040195 (+) False LOC122343063
unassigned_transcript_309 other downstream 1009240 20062654 ~ 20062727 (+) True trnam-cau_2

Expression Profile