RNA id: TU44203



Basic Information


Item Value
RNA id TU44203
length 762
lncRNA type sense_over
GC content 0.43
exon number 4
gene id LOC122342243
representative False

Chromosome Information


Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 19333729 ~ 19337492 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


aggTACCAGTGGAGCGCGTGATACTCATGTGTTCTGCAGTTCTGGTGAAAATGTCAGTCTGCCCTGTAATAATGCTCTTTCTGGCTGTACATCAACTACATGGATCCATAGCAAACAATCAAGGACAGATGAACTGATTCAGAaaggaaagaagaaagacataGAGAGATCTGAGAGACTGAGTCTGGGCTCTGACTGCTCTCTGAACATCACTAAAGTCACGAAAGAAGATCATGGATCTTACATCTGCCAGCAATTTGTGACTGGAAAACAAGGAAATGATGAACAACAAGGAAATGATTCACGCGTTTATCTGCATTTTCTTCATGtcACTTCATCCTCCTCTCAGATCAGTCAAGGCAGctctgtgactctctcctgTCAGTTGTATTGTGATCTAATCTCTTGTGATTCTTTGGTCCGTGATGAAGTTCAGCTGATCTGGGTGAATCAGTTTGGTGTGAATCTACAGACAGACTCCAGATATCAGATCTCATTCTCCTCAGAACACTGTAACATCTCTCTGACTACAAAACTCCAGAATGAAGATCTCAACAGAGAGTGGAGATGTGAGGTTACTCAGAGAAATCAACCGAAGACCTCGGTCACGTATACTGTCAAGTATTCAgCTGCAGTCGATTCAACAAAACCGCTCCCAGTCAAGAATAAACCAAGACAAACTACACGACCAGCTGCAGTCGATTCAACAAAACCGATTCCAGTCAGCAGCTCCGAGAAGAAACCAAGACAAACTAAACCAGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_006250705.1 lncRNA downstream 214 19332922 ~ 19333726 (-) True LOC122343183
XR_006250721.1 lncRNA downstream 107441 19225974 ~ 19226499 (-) True LOC122343199
TU44183 lncRNA downstream 280409 19045817 ~ 19053531 (-) True G29806
TU44168 lncRNA downstream 366876 18966776 ~ 18967064 (-) True G29796
XR_006250707.1 lncRNA downstream 375892 18956218 ~ 18958048 (-) True LOC122343185
TU44211 lncRNA upstream 244843 19581356 ~ 19581782 (-) True G29829
TU44212 lncRNA upstream 320487 19657000 ~ 19660386 (-) True G29830
TU44222 lncRNA upstream 348102 19684615 ~ 19685706 (-) True G29833
TU44219 lncRNA upstream 349523 19686036 ~ 19691402 (-) False G29832
TU44216 lncRNA upstream 350356 19686869 ~ 19691402 (-) False G29832
XM_043237435.1 mRNA downstream 316713 19015085 ~ 19017227 (-) True LOC122343103
XM_043236047.1 mRNA downstream 363403 18967261 ~ 18970537 (-) True LOC122342237
XM_043237328.1 mRNA downstream 406560 18923263 ~ 18927380 (-) True LOC122343034
XM_043237486.1 mRNA downstream 416407 18916326 ~ 18917533 (-) False LOC122343130
XM_043237399.1 mRNA downstream 431442 18898807 ~ 18902498 (-) True LOC122343082
XM_043236056.1 mRNA upstream 134920 19471433 ~ 19474667 (-) True LOC122342247
XM_043236058.1 mRNA upstream 326385 19662898 ~ 19677320 (-) True LOC122342252
XM_043236060.1 mRNA upstream 415901 19752414 ~ 19754123 (-) True LOC122342256
XM_043237364.1 mRNA upstream 644666 19981179 ~ 19990088 (-) False LOC122343058
XM_043237363.1 mRNA upstream 644666 19981179 ~ 19990007 (-) False LOC122343058
TU44159 other downstream 402065 18931536 ~ 18931875 (-) True G29787
XR_006250672.1 other downstream 416407 18916326 ~ 18917533 (-) True LOC122343130
TU44133 other downstream 431392 18900565 ~ 18902548 (-) False LOC122343082
TU44045 other downstream 598300 18724825 ~ 18735640 (-) False LOC122342944
XR_006250670.1 other downstream 672291 18656980 ~ 18661649 (-) False LOC122343054
unassigned_transcript_306 other upstream 724076 20060589 ~ 20060671 (-) True trnal-aag
unassigned_transcript_307 other upstream 724839 20061352 ~ 20061432 (-) True trnal-cag
unassigned_transcript_308 other upstream 725962 20062475 ~ 20062557 (-) True trnal-aag_1
unassigned_transcript_310 other upstream 726743 20063256 ~ 20063338 (-) True trnal-cag_1
unassigned_transcript_311 other upstream 727872 20064385 ~ 20064467 (-) True trnal-aag_2

Expression Profile