RNA id: TU44214


Basic Information

Item Value
RNA id TU44214
length 1941
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G29831
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 19686857 ~ 19692608 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTGGCTTTTAAATACGAATATGGCCAGGATAGGGGTAACTTCATGGGTCTAGACAGGAATGATGATCCGTTAGCTCATGATGGAGCGGCATTGCGAGACGCAGTAGAACATGGACAgggattgttgaaaaataaaaaaggaaaagcagacagggcccatACTTTCGCTGCACTCACTGCCCTCTCCCAAAGCATGACCTTGCTTGGTGCAGACACaatacagacttgaaggcaaactgtgccttccacgaagtttgtacaaaacagcagcaagttTGACACAAGGGaaacatgtgtcaacaggagggatggtgcatagggttttatgcaccaggtgttatgcaccagggtttaataactactaaaaaaaaattttgtgaatcttgtttgatctgctgtaaacataactgcagacctaagagaggtcaatttccaaagccagactaccttttcagtttatccacatggattttattgaactgacaccttgccaacagtacaaatactgaaagaccgttcagtttaccgctgtgtgatgatgtgtgtgagaaaccacaagagcagcatacactagcagaatggatgaacaaaatgttgaaatttaaagatgttgtgagagcaaatgatctgccagatatacctctgtccccacaggtctcaagagtgaaaccaggcgacagcatcctgatTAAAGCAACGTGGTGCTGACTACCCCAACTGCCTTGAAGACCGCTGAGAGGTCTACGTGGATTCATCAGAGCCACTGTACAAAGGTCACAGAGTTTCCTGCCTAAAACGACGAGTACGGGTGTGAAGTCTGGTTACAAAGGGTGGTGAAGGCAATAGGCCTCGCTGGTCTCAACCCGGTGAAGAAACCAACAGAGCCCTACTCATTTTTAGCATGGCGTGGAAAGAAATCACCTTTGTGGCAGTAGCAGTCCTGCTGTGGATGGatgcggaggagagagagacgattaaaggggaactgaaactaattgaattttgactggttcatagaacaacatgaactaaagactcattttgatttgaacatgtttatgcatgatctgtgttttaccatgtttaagggcaatgattactaaaatgattagccagacttttccagttttaccatacttctccaccaagagagaaatggagagcttttaatatcatgtgtgaagtctcagttaaaactaCAGCTGTGAtatggctgagtgctgatgttatgatacaaaaggtacactgataagctacagtagccgtgctgagaacaagaggcaccgttttatttcattcttccttttcagtttattttcacattttcctcctatgttcaagctttaaattttgtattgtatacattatgattaagatgcaagccttacaggtgatcgcccaggTAACATTTtggggtcggttgggaattttcctcagatactggggtttcgcccaaccttgctgtttaaagtaagcatcgactatttaatcaagtaatcagtagagatgtagttcagTATGCATATgccttattatgttatttttcaggtgctaaACGTCAAAGAGGAGGGatatgttagggttatgtattgacattttgcaactttgatccttcagttacagcttccatcgggtgccaggctttgttgtcagcctgatgagaacggaatgttggagttaaatgttgacagttatgcacctgtggccttttagtttcagtttgattcttggtcataacatggcctccgtagaatactgatagggccaccggaagaatctgaaggagtgaagattctgacgcacaagaaatgtggccaattgttttcatttactgtatcttgtcttttcctctataaataaagtgacttgcaagctgagcttcggaggaggcaaagcggaggaggcaaagcgggaggaggcaaagcagggaaggaggcagaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250725.1 lncRNA upstream 173262 19513073 ~ 19513595 (+) True LOC122343203
XR_006250720.1 lncRNA upstream 271874 19414461 ~ 19414983 (+) True LOC122343198
XR_006250711.1 lncRNA upstream 280398 19405903 ~ 19406459 (+) True LOC122343189
XR_006250695.1 lncRNA upstream 314968 19369771 ~ 19371889 (+) True LOC122343175
TU44189 lncRNA upstream 606668 19079768 ~ 19080189 (+) True G29809
TU44224 lncRNA downstream 38654 19731262 ~ 19786128 (+) True G29835
TU44237 lncRNA downstream 177812 19870420 ~ 19870915 (+) True G29844
TU44244 lncRNA downstream 285712 19978320 ~ 19978626 (+) True G29850
TU44246 lncRNA downstream 287881 19980489 ~ 19980723 (+) True G29852
TU44250 lncRNA downstream 289316 19981924 ~ 19982894 (+) True G29854
XM_043236055.1 mRNA upstream 237024 19445561 ~ 19449833 (+) True LOC122342246
XM_043236051.1 mRNA upstream 418807 19265355 ~ 19268050 (+) True LOC122342242
XM_043236050.1 mRNA upstream 536222 19147001 ~ 19150635 (+) True LOC122342239
XM_043236049.1 mRNA upstream 618974 19064025 ~ 19067883 (+) True LOC122342238
XM_043236046.1 mRNA upstream 723883 18960662 ~ 18962974 (+) True LOC122342236
XM_043236059.1 mRNA downstream 11291 19703899 ~ 19706327 (+) True LOC122342253
XM_043237387.1 mRNA downstream 53126 19745734 ~ 19750074 (+) True LOC122343071
XM_043237388.1 mRNA downstream 53126 19745734 ~ 19750074 (+) False LOC122343071
XM_043237373.1 mRNA downstream 345325 20037933 ~ 20043453 (+) True LOC122343063
XM_043236062.1 mRNA downstream 351147 20043755 ~ 20045999 (+) True LOC122342262
TU44195 other upstream 343946 19290220 ~ 19342911 (+) True G29814
TU43926 other upstream 800455 18883179 ~ 18886402 (+) True G29642
TU43756 other upstream 1225540 18436460 ~ 18461317 (+) True G29545
TU43729 other upstream 1385668 18300415 ~ 18301189 (+) True G29526
TU42966 other upstream 3212476 16473898 ~ 16474381 (+) True G28982
TU44225 other downstream 38654 19731262 ~ 19786128 (+) False G29835
TU44230 other downstream 53133 19745741 ~ 19747442 (+) False LOC122343071
TU44267 other downstream 345330 20037938 ~ 20040195 (+) False LOC122343063
unassigned_transcript_309 other downstream 370046 20062654 ~ 20062727 (+) True trnam-cau_2
unassigned_transcript_312 other downstream 371954 20064562 ~ 20064635 (+) True trnam-cau_3

Expression Profile