RNA id: TU44222


Basic Information

Item Value
RNA id TU44222
length 1092
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G29833
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 19684615 ~ 19685706 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gcttagaacaattttttgtcgacaaaccaatgtcccagactattggtcgacagaattcgtctgtcgagattactgtgcttccaaagcaaaccaatgtcccagactattggtcgacagaattcgtctgtcgagattactgtgcttccaaagcagctagtaatcttggcttcactgtcgatacagatccttcaccttaacaggcaaatcactggctacgaactcgagccggtacctattatactgcagtctcatccacatacttcacccataaaaaaacaataccggtatatcacctgatcagtgcgttgagttgtccttccaacggctcccgtcagacagcccggagaagttgatttttccagacgaagaatcaccgacccccctcgaattcacgcgggtggatttttgcaggcagctattgcctggctctgatcagagactgtctctcggctcctcttcgtcctctcctcctccgctctgtcgtgttgggatccggctcgaaggaccaagtaaatgttgagactatttcactcaaacggctctttaccaggaaggatcaactcaaggcgaaataaaacacaagacaggtttttatggattttaaggcttgcaaagattgtgctgtcgattgcaagcgggagagaagcaggtttctccttaacatcccttttgcctccagacggatctcagtccgcctgaggccgggggccgggcaggcccccgccttctgcctccttccctgctttgcctcctcccgctttgcctcctccgctttgcctcctccgaagctcagcttgcaagtcactttatttatagaggaaaagacaagatacagtaaatgaaaacaattggccacatttcttgtgcgtcagaatcttcactccttcagattcttccggtggccctatcagtattctactacggaggccatgttatgaccaagaatcaaactgaaactaaaaggccacaggtgcataactgtcaacatttaactccaacattccgttctcatcaggctgacaaagcctggcacccgatggaagctgtaactgaaggatcaaagttgcaaaatgtcaatacataaccctaaca

Function

GO: NA

KEGG:

id description
ko05030 Cocaine addiction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44212 lncRNA downstream 24229 19657000 ~ 19660386 (-) True G29830
TU44211 lncRNA downstream 102833 19581356 ~ 19581782 (-) True G29829
TU44203 lncRNA downstream 348102 19333940 ~ 19336513 (-) False LOC122342243
XR_006250705.1 lncRNA downstream 350889 19332922 ~ 19333726 (-) True LOC122343183
XR_006250721.1 lncRNA downstream 458116 19225974 ~ 19226499 (-) True LOC122343199
TU44219 lncRNA upstream 330 19686036 ~ 19691402 (-) False G29832
TU44216 lncRNA upstream 1163 19686869 ~ 19691402 (-) False G29832
TU44217 lncRNA upstream 1163 19686869 ~ 19692580 (-) True G29832
TU44232 lncRNA upstream 44196 19729902 ~ 19730382 (-) True G29839
TU44233 lncRNA upstream 44730 19730436 ~ 19731117 (-) True G29840
XM_043236058.1 mRNA downstream 7295 19662898 ~ 19677320 (-) True LOC122342252
XM_043236056.1 mRNA downstream 209948 19471433 ~ 19474667 (-) True LOC122342247
XM_043236053.1 mRNA downstream 347123 19333729 ~ 19337492 (-) True LOC122342243
XM_043237435.1 mRNA downstream 667388 19015085 ~ 19017227 (-) True LOC122343103
XM_043236047.1 mRNA downstream 714078 18967261 ~ 18970537 (-) True LOC122342237
XM_043236060.1 mRNA upstream 66708 19752414 ~ 19754123 (-) True LOC122342256
XM_043237364.1 mRNA upstream 295473 19981179 ~ 19990088 (-) False LOC122343058
XM_043237363.1 mRNA upstream 295473 19981179 ~ 19990007 (-) False LOC122343058
XM_043237365.1 mRNA upstream 295473 19981179 ~ 19990007 (-) True LOC122343058
XM_043237466.1 mRNA upstream 304978 19990684 ~ 19994596 (-) True LOC122343115
TU44159 other downstream 752740 18931536 ~ 18931875 (-) True G29787
XR_006250672.1 other downstream 767082 18916326 ~ 18917533 (-) True LOC122343130
TU44133 other downstream 782067 18900565 ~ 18902548 (-) False LOC122343082
TU44045 other downstream 948975 18724825 ~ 18735640 (-) False LOC122342944
XR_006250670.1 other downstream 1022966 18656980 ~ 18661649 (-) False LOC122343054
unassigned_transcript_306 other upstream 374883 20060589 ~ 20060671 (-) True trnal-aag
unassigned_transcript_307 other upstream 375646 20061352 ~ 20061432 (-) True trnal-cag
unassigned_transcript_308 other upstream 376769 20062475 ~ 20062557 (-) True trnal-aag_1
unassigned_transcript_310 other upstream 377550 20063256 ~ 20063338 (-) True trnal-cag_1
unassigned_transcript_311 other upstream 378679 20064385 ~ 20064467 (-) True trnal-aag_2

Expression Profile