RNA id: TU44234


Basic Information

Item Value
RNA id TU44234
length 595
lncRNA type sense_over
GC content 0.50
exon number 2
gene id G29841
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 19731261 ~ 19786160 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gagaacggaatgttggagttaaatgttgacggttatgcacctgtggccttttagtttcagtttgattcttggtcataacatggcctccgtagaatactgatagggccaccggaagaatctgaaggagtgaagattctgacgcacaagaaatgtggccaattgttttcatttactgtatcttgtcttttcctctataaataaagcgacttgcgatctgagcgtcggaggaggcaaagcgggaggaggcaaagcagggaaggaggcagaaggcgggggcctgcccggcccccggcctcaggcggactgtgatccgtctggagacaaaagggaggttaaggagaaacctgtttctctcccgcttgcattCGACAGCgcaatctttgcaagccttaaaatccaaaaacttgtcttgtgttttatttcgccttgagttgatccttcctggtaaagagccgtttgagtgaaatagtctcaacatttacttggtccttcgagccggatcccaacacgacagagcggaggaggagaggacgaagaggagccgagagacagtctctgatcagagccaggcaatagctgcctgcaaaaatccacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44233 lncRNA downstream 144 19730436 ~ 19731117 (-) True G29840
TU44232 lncRNA downstream 879 19729902 ~ 19730382 (-) True G29839
TU44217 lncRNA downstream 38681 19686869 ~ 19692580 (-) True G29832
TU44219 lncRNA downstream 39859 19686036 ~ 19691402 (-) False G29832
TU44216 lncRNA downstream 39859 19686869 ~ 19691402 (-) False G29832
XR_006250722.1 lncRNA upstream 10576 19796736 ~ 19797257 (-) True LOC122343200
TU44243 lncRNA upstream 158134 19944294 ~ 19973447 (-) True G29849
TU44240 lncRNA upstream 189071 19975231 ~ 19976141 (-) True G29847
TU44245 lncRNA upstream 193797 19979957 ~ 19980359 (-) True G29851
TU44247 lncRNA upstream 194329 19980489 ~ 19980723 (-) True G29853
XM_043236058.1 mRNA downstream 53941 19662898 ~ 19677320 (-) True LOC122342252
XM_043236056.1 mRNA downstream 256594 19471433 ~ 19474667 (-) True LOC122342247
XM_043236053.1 mRNA downstream 393769 19333729 ~ 19337492 (-) True LOC122342243
XM_043237435.1 mRNA downstream 714034 19015085 ~ 19017227 (-) True LOC122343103
XM_043236047.1 mRNA downstream 760724 18967261 ~ 18970537 (-) True LOC122342237
XM_043237364.1 mRNA upstream 195019 19981179 ~ 19990088 (-) False LOC122343058
XM_043237363.1 mRNA upstream 195019 19981179 ~ 19990007 (-) False LOC122343058
XM_043237365.1 mRNA upstream 195019 19981179 ~ 19990007 (-) True LOC122343058
XM_043237466.1 mRNA upstream 204524 19990684 ~ 19994596 (-) True LOC122343115
XM_043237503.1 mRNA upstream 214933 20001093 ~ 20003553 (-) False LOC122343146
TU44159 other downstream 799386 18931536 ~ 18931875 (-) True G29787
XR_006250672.1 other downstream 813728 18916326 ~ 18917533 (-) True LOC122343130
TU44133 other downstream 828713 18900565 ~ 18902548 (-) False LOC122343082
TU44045 other downstream 995621 18724825 ~ 18735640 (-) False LOC122342944
XR_006250670.1 other downstream 1069612 18656980 ~ 18661649 (-) False LOC122343054
unassigned_transcript_306 other upstream 274429 20060589 ~ 20060671 (-) True trnal-aag
unassigned_transcript_307 other upstream 275192 20061352 ~ 20061432 (-) True trnal-cag
unassigned_transcript_308 other upstream 276315 20062475 ~ 20062557 (-) True trnal-aag_1
unassigned_transcript_310 other upstream 277096 20063256 ~ 20063338 (-) True trnal-cag_1
unassigned_transcript_311 other upstream 278225 20064385 ~ 20064467 (-) True trnal-aag_2

Expression Profile