RNA id: TU44246


Basic Information

Item Value
RNA id TU44246
length 235
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G29852
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 19980489 ~ 19980723 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cacagagcgcaTGGTTAGCCATGAAGATAAAGCTACCAAACAGGAAAAGGTAGCAGATGGAGAGAACTCTggtgagagctccctctgctggcctggAGTTACATCTTGACTAATGCCTAGATTTAATGATGAATGACGCTGATGTATAAGCATAAACttcaaaaaaactgtaaaatgattgttcgattctgattggctaataAGAGTGTTGTTTCAGGGTGAAGATGTTTAAGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44244 lncRNA upstream 1863 19978320 ~ 19978626 (+) True G29850
TU44237 lncRNA upstream 109574 19870420 ~ 19870915 (+) True G29844
TU44224 lncRNA upstream 194361 19731262 ~ 19786128 (+) True G29835
TU44214 lncRNA upstream 287881 19686857 ~ 19692608 (+) True G29831
XR_006250725.1 lncRNA upstream 466894 19513073 ~ 19513595 (+) True LOC122343203
TU44250 lncRNA downstream 1201 19981924 ~ 19982894 (+) True G29854
TU44256 lncRNA downstream 20344 20001067 ~ 20157523 (+) True G29857
XR_006250696.1 lncRNA downstream 207261 20187984 ~ 20189971 (+) True LOC122343176
TU44291 lncRNA downstream 286113 20266836 ~ 20270112 (+) True G29883
TU44354 lncRNA downstream 342957 20323680 ~ 20442006 (+) True G29918
XM_043237387.1 mRNA upstream 230415 19745734 ~ 19750074 (+) True LOC122343071
XM_043237388.1 mRNA upstream 230415 19745734 ~ 19750074 (+) False LOC122343071
XM_043236059.1 mRNA upstream 274162 19703899 ~ 19706327 (+) True LOC122342253
XM_043236055.1 mRNA upstream 530656 19445561 ~ 19449833 (+) True LOC122342246
XM_043236051.1 mRNA upstream 712439 19265355 ~ 19268050 (+) True LOC122342242
XM_043237373.1 mRNA downstream 57210 20037933 ~ 20043453 (+) True LOC122343063
XM_043236062.1 mRNA downstream 63032 20043755 ~ 20045999 (+) True LOC122342262
XM_043236064.1 mRNA downstream 202930 20183653 ~ 20184498 (+) True LOC122342265
XM_043236067.1 mRNA downstream 363623 20344346 ~ 20346724 (+) False LOC122342270
XM_043237303.1 mRNA downstream 395687 20376410 ~ 20378106 (+) True LOC122343026
TU44225 other upstream 194361 19731262 ~ 19786128 (+) False G29835
TU44230 other upstream 233047 19745741 ~ 19747442 (+) False LOC122343071
TU44195 other upstream 637578 19290220 ~ 19342911 (+) True G29814
TU43926 other upstream 1094087 18883179 ~ 18886402 (+) True G29642
TU43756 other upstream 1519172 18436460 ~ 18461317 (+) True G29545
TU44267 other downstream 57215 20037938 ~ 20040195 (+) False LOC122343063
unassigned_transcript_309 other downstream 81931 20062654 ~ 20062727 (+) True trnam-cau_2
unassigned_transcript_312 other downstream 83839 20064562 ~ 20064635 (+) True trnam-cau_3
unassigned_transcript_315 other downstream 85745 20066468 ~ 20066543 (+) True trnam-cau_4
unassigned_transcript_318 other downstream 87650 20068373 ~ 20068448 (+) True trnam-cau_5

Expression Profile