RNA id: TU44250


Basic Information

Item Value
RNA id TU44250
length 950
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G29854
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 19981924 ~ 19982894 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TATTgggtttttaattattcattttcaggatccacccacacacacacacactctgaacaGTTAAATAGCAAAAGTTGTTCGAGTTCATTAACATGTAACTTTTAGCGCTACCACTCACTTAAAGACTTCAGAGATGAATTACGTTTATGCTTATTACGTTTTATGttggacttttattttatttaaattaatgattgTTGTTATTCTTTTTACCAAGCAAGACTATGATAAGGAAGGATTAGCTGAACGGTCTGACCAGGTGTCCTTCAGTGATTCGGTTAAGTGCGAGGAGGTTGAGGCATTACCGCATGAAAGTGTTCTGTGATCCCGATTTAAATCTTCATTGTGATACGTTGAGCTGTCAGGAGCTTCCGGTGCAAAAGAGAGCATGTGCAAAGAAATTACATAGAAATGGCTAAAACGATTCATCAAgacagtttcactgatgatccaacaaatgcataaaaccCAGGATAGAGGCTCTGAGTGAATGttgtctggactgtgtggatgagtctcattgtGTCCGAGatgctgtagaaggacagagttcctgcgctctcatccacGTACACTCCTACTTTACGGCTGGACGCTACAGGCAGTTCAGTCCGTTTGTTATTATGAACAAATGAGCATCTGTCAGGAGAGCAtaacaaactccaggactgatcattacgTCCAAACAGGCACTCGTCGCCACCTGTCTTCCTGCCGATGCTCTTATACGACACCGATATGTCCACACCAAACATCCCGCTCCACTCAATCTCCCAGTAACTGCGTCCGCACACACTCTCTCGACACAACACCTGAAGATTATAtccatcaaatctgtctggatgatcagtaTACGGCTGCTCTGTGAGAGTACCAAAAATCTCTCGGTTCCTGTCAGACAGACAGAGGTGTTTGTTCACTGTGTTCAGGTCCAGGGTGAGAGGACTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44246 lncRNA upstream 1201 19980489 ~ 19980723 (+) True G29852
TU44244 lncRNA upstream 3298 19978320 ~ 19978626 (+) True G29850
TU44237 lncRNA upstream 111009 19870420 ~ 19870915 (+) True G29844
TU44224 lncRNA upstream 195796 19731262 ~ 19786128 (+) True G29835
TU44214 lncRNA upstream 289316 19686857 ~ 19692608 (+) True G29831
TU44256 lncRNA downstream 18173 20001067 ~ 20157523 (+) True G29857
XR_006250696.1 lncRNA downstream 205090 20187984 ~ 20189971 (+) True LOC122343176
TU44291 lncRNA downstream 283942 20266836 ~ 20270112 (+) True G29883
TU44354 lncRNA downstream 340786 20323680 ~ 20442006 (+) True G29918
TU44355 lncRNA downstream 361470 20344364 ~ 20345054 (+) True LOC122342270
XM_043237387.1 mRNA upstream 231850 19745734 ~ 19750074 (+) True LOC122343071
XM_043237388.1 mRNA upstream 231850 19745734 ~ 19750074 (+) False LOC122343071
XM_043236059.1 mRNA upstream 275597 19703899 ~ 19706327 (+) True LOC122342253
XM_043236055.1 mRNA upstream 532091 19445561 ~ 19449833 (+) True LOC122342246
XM_043236051.1 mRNA upstream 713874 19265355 ~ 19268050 (+) True LOC122342242
XM_043237373.1 mRNA downstream 55039 20037933 ~ 20043453 (+) True LOC122343063
XM_043236062.1 mRNA downstream 60861 20043755 ~ 20045999 (+) True LOC122342262
XM_043236064.1 mRNA downstream 200759 20183653 ~ 20184498 (+) True LOC122342265
XM_043236067.1 mRNA downstream 361452 20344346 ~ 20346724 (+) False LOC122342270
XM_043237303.1 mRNA downstream 393516 20376410 ~ 20378106 (+) True LOC122343026
TU44225 other upstream 195796 19731262 ~ 19786128 (+) False G29835
TU44230 other upstream 234482 19745741 ~ 19747442 (+) False LOC122343071
TU44195 other upstream 639013 19290220 ~ 19342911 (+) True G29814
TU43926 other upstream 1095522 18883179 ~ 18886402 (+) True G29642
TU43756 other upstream 1520607 18436460 ~ 18461317 (+) True G29545
TU44267 other downstream 55044 20037938 ~ 20040195 (+) False LOC122343063
unassigned_transcript_309 other downstream 79760 20062654 ~ 20062727 (+) True trnam-cau_2
unassigned_transcript_312 other downstream 81668 20064562 ~ 20064635 (+) True trnam-cau_3
unassigned_transcript_315 other downstream 83574 20066468 ~ 20066543 (+) True trnam-cau_4
unassigned_transcript_318 other downstream 85479 20068373 ~ 20068448 (+) True trnam-cau_5

Expression Profile