RNA id: XM_043237373.1


Basic Information

Item Value
RNA id XM_043237373.1
length 3838
RNA type mRNA
GC content 0.37
exon number 3
gene id LOC122343063
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 20037933 ~ 20043453 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTGCGCCTCCGCGTCTGCGACTCGGCTGAAGGAAAGGAAAGATCGTCTGAGATCCGTGttataaaaatggcttttattaaagaggagaccGAAGACGTGATCGTAGAAACGTCGAGAGTCAAGCATGAAGATACCGAGGAACAAACGGaCTCGAGGCTGCTGAAAAAGGAGAGTCAAAAACTGACTGAAACAACAGATAAAGTTCAGTACGAAAAACGTGATTTCATAACCGGAGAGAAGTTTAGTTGCTCACAGGCTAAAAAGACCACTCGGGAAAAAACTAGAGGTACCTTGACCTGCCAAGAGTGTGGAAAGAGTTATAGTAAAAAAGGAAGCCTTAAAGTCCATATGAGGTCTCACAGTGGAGAAAAACCTTACACCTGCCCacagtgtggaaaaagtttcTCCGTTAAAGGAAACCTTGAAGTCCATATAAGGATTCACACGGGAGAAAAACCCTAttcctgccaacagtgtggaaatgGTTTCACTAAAAAGGAAAACCTCAAAGTCCACAAGATaactcacaccggagagaagccttacagCTGCCAACAGTGTGAAAAAAGTTTCAGTAAAAAAGGGATCTTTAAAAGGCACCTGAAAATTCACGTTGAAGATAAGCctttcacctgccaacagtgtggaaatgGTTTCATTCAAAGCGCAGACCTTAAAAtccacatgagaattcacaccggagagaagcccttcaTGTGCGCTCACTGCGGAAAGCGTTTCACGCGGAAACAAAGCCTTAAAGGCCACATAAGAACTCACACAGGAGAGAAACCTTActcctgccaacagtgtggaaggAGTTTCACCGAAAAAGGAAACCTCGAGGTCCACAAGAAaactcacaccggagagaaaccttacaCCTGCCCGCAGTGTGGGAGAAGTTTCGTTAAAAAGACCGACTTCGAAAGGCACATAAGAGTACACACGGGAGAGAAGCCTTAtgcctgccaacagtgtggaaagagcttttCGCAGCAGGGAAGCCTCAATGTCCACAAGAGGATTCACGCCGAAGAGAAACCTTCGAGCCACGCGAGGATTCACTTGATTGAAGGATTTTACGTTATCGCTGAGGAAGGTGTTTCACAGACGGGAAACATCGTAAGAATCGTTGACGCTTAGTGCTCATGCGGGTTAAAATTGTTTGCTTGTCTTTAGAGTTCGCTCAACAAAAGTTGAAAATGATACCATGCCTCACTGTCAAGCTCTGCGCATGTGACTCCGTTTTCTCTGATGAACCCAtggttatgtaaaaaaaaactaaacttggCTCTTCTAAGCTTTAGAATTGGAACggatgggtttttttgttaaacagtCCGAAAGGAGTCCAATAAAGCGCATCcatccataataaaatgtgcctcGCTGGAATCAAGGCCTTCTGGAacaaatctgtgtgtttttgtaagaatAAGATGTGCATTTAAAACGTTTGCGAAAGCCATTTAGATGCAAGATGCGTGTTTTGACTTcgtaatttaatgtatttaggtatttaatgtattaatgtattcgTAATTTAATGTATTAGTATAAGTACTTTGACTTTTTCAGATTGAAGTCCTCAAACAGCCAATTATTGAAAAGGTACTTGGAGAGTTCTCGAATGCTTTAATGGCAGTATATATGGACTAagtattaatttgtgttccgtAAAAGTTTTTCTTGAAAAATGAACGATGCCGTGGATCTGATACACATTGGCTCTGTAAGAATCGCGGTCTCGCGATATCGATAaaagttgattttgttttaaaacgttTCGGACTGATTGCATAGCTAGATTTGTCACGTATAACATCGAAAAACCCACGCTGGCGCAGAAAATGTCAACGTTTTTCTATATGCGATTTGTGTACATCGCAATTTCAACGTTAAAAGTACCCTGAAGGAATTTTTATGTggccaaatattaaaatcacgtggatttaaaagtaaaacgAAACCTCGCCACACTGTTGGCGCCCTCTGCAGGTGTTTGTTATAATACATGATGCGAGTAGGTTATATTCATGTTACGTATAAACATCTTACGTTATGTAGTCTATTTAAAAAGTGCTTAGTAAAATTGTGTGATTACTTGGATTTGAATTATTGTCTCATTGCAAATTTGAGATATAAAAAATGTagtcaatattaatttttattagacTACTAAAAATATCGGATTACtcaattgttaaaataatcagtATTACTTGATTACCCAGATGATTATTAGTTACAGCTTTAGATTAGTTGTTAAAtgcgttgtttttttttgcaatttaaaaggCAAATGGTTTATTGAAAATTTATTtgtaccattttatttatttattaaaatgtgaaagacGGTAACGACATTGCTATCTCTAATTTTAGTCCTTGAAAAcggaaaaaaaactcaaaagttcGTTTTGATACGCTCTAGAATGACGGAAGACGCAAGTCTGGGAAGAAGAATGGTATagaaattgttattattgttttccttGCATAAAAAAGGTATTCTCACTGTGTCACAAATGTGGAGTTGAGCCGCTGATGTCCCATGAActgttttacagatgtttttatgtttctggAGATGAGAACATTTCAGTCGTTTCAAAGATGAACATGGGTCTCAACATGTGGGTGAGTTAATGgcatagttttcattttagggtaGACTGACGAAGTGCAGTGACCACATATATCCAGCAGTGGTCCGTAGAGACCACTAGAGTTAGTTTAGTCCACTGTAAGTATGTTGACTGAGTCTGGCGTGTTCGTTCACCTTTGTTGCtaaaattacagaaatactGGAAAAAACTTTCATGTTGCATTACCTGACTTCAATAGCAAACATTgcataacataaaatgtaaccAAACAAACCCCTAACTCGAGAGAACTTATTAATTATAGACAAATTTACAGAAGGAGAAAGGAGAAACCATACTTTTGAACAACTTTGGTCAGGAATCAAGCCCCACCAATCATGTTAGAGCTTCTCGTTTTGTTATTGAATCATGGAGTGCCACAGGGCTCAGTATTAGgtccttttctttttatgctTGTACTTTCCCTCTGATAGACAGCTGTTCCCGTTCAATAAACCGTAAAAAAAGTGCAATCAGTGCACGGATGTTTTTGCAGACAATACATACTTCACCGAATTCTGTTATACCACAATTCATTTCAGATATAAGAACAATAAACATAGGGATAACCGAAACTATAAAGCACTTACTCGTGTACATGAGAATaattaacacacaaacacacataaaacctTTGTCATTAGATAAAGCATTTCAGTGTTACATTAGTCACTAATTTATTcgaatatatagttatttaaacacttaaacCAATAAAGCGCACACCTTTCCTACAGCCGAATTTCGTTCGACTTTGCGGTATATAATTTCTCTCAAAATgtgattataatatataacagaaattctaaataatcatttataaataataacaaaacaacaaaaatttcAAGAAGAAACTATAGCggttttagcatagcttagcatagatcattgaatctgattagaccagtagcatctcgTTTAAAAGGGACCAAAGAGTGTGTCATTTTTTAGCACaatttcaaaacaaactttGCGGTCCAAACTGTTGAAAATTGCACTTTTCCCACAGAGCAAACAACACAAATACGTCAAACATGTTCTTAGGTtctcaaaaaaaacccaaaaaacacacacgtcaCATGTTTTTCTTATGGATGTACTTCTAaagatcagttttttttcttaaattggTTTTTGTGAACAATTTTGCAGCAATCAAAATACGATATCTTAAAACTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44250 lncRNA upstream 55039 19981924 ~ 19982894 (+) True G29854
TU44246 lncRNA upstream 57210 19980489 ~ 19980723 (+) True G29852
TU44244 lncRNA upstream 59307 19978320 ~ 19978626 (+) True G29850
TU44237 lncRNA upstream 167018 19870420 ~ 19870915 (+) True G29844
TU44224 lncRNA upstream 251805 19731262 ~ 19786128 (+) True G29835
XR_006250696.1 lncRNA downstream 144531 20187984 ~ 20189971 (+) True LOC122343176
TU44291 lncRNA downstream 223383 20266836 ~ 20270112 (+) True G29883
TU44354 lncRNA downstream 280227 20323680 ~ 20442006 (+) True G29918
TU44355 lncRNA downstream 300911 20344364 ~ 20345054 (+) True LOC122342270
XR_006250693.1 lncRNA downstream 394212 20437665 ~ 20438508 (+) True LOC122343173
XM_043237387.1 mRNA upstream 287859 19745734 ~ 19750074 (+) True LOC122343071
XM_043237388.1 mRNA upstream 287859 19745734 ~ 19750074 (+) False LOC122343071
XM_043236059.1 mRNA upstream 331606 19703899 ~ 19706327 (+) True LOC122342253
XM_043236055.1 mRNA upstream 588100 19445561 ~ 19449833 (+) True LOC122342246
XM_043236051.1 mRNA upstream 769883 19265355 ~ 19268050 (+) True LOC122342242
XM_043236062.1 mRNA downstream 302 20043755 ~ 20045999 (+) True LOC122342262
XM_043236064.1 mRNA downstream 140200 20183653 ~ 20184498 (+) True LOC122342265
XM_043236067.1 mRNA downstream 300893 20344346 ~ 20346724 (+) False LOC122342270
XM_043237303.1 mRNA downstream 332957 20376410 ~ 20378106 (+) True LOC122343026
XM_043237447.1 mRNA downstream 348012 20391465 ~ 20392374 (+) True LOC122343110
TU44225 other upstream 251805 19731262 ~ 19786128 (+) False G29835
TU44230 other upstream 290491 19745741 ~ 19747442 (+) False LOC122343071
TU44195 other upstream 695022 19290220 ~ 19342911 (+) True G29814
TU43926 other upstream 1151531 18883179 ~ 18886402 (+) True G29642
TU43756 other upstream 1576616 18436460 ~ 18461317 (+) True G29545
unassigned_transcript_309 other downstream 19201 20062654 ~ 20062727 (+) True trnam-cau_2
unassigned_transcript_312 other downstream 21109 20064562 ~ 20064635 (+) True trnam-cau_3
unassigned_transcript_315 other downstream 23015 20066468 ~ 20066543 (+) True trnam-cau_4
unassigned_transcript_318 other downstream 24920 20068373 ~ 20068448 (+) True trnam-cau_5
unassigned_transcript_321 other downstream 26820 20070273 ~ 20070348 (+) True trnam-cau_6

Expression Profile