RNA id: TU44299


Basic Information

Item Value
RNA id TU44299
length 383
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G29889
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 20145707 ~ 20147299 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAGAAACGCCCAACCGTGAAGATACAGAGGAGCGCGCGAAGACGGCGTTCGTCAAAGAGGAACGCGAAAACGTGAAGATAGAAGATGCATTCAGAGTCAAACAAGAAGATGAGGAGCAAATAGACCTAATGGCACCGAAAGAGGAGAGGGACGTGTTGAATGAAATTGAGGAGAACGATCAGAACGGGAATCTTCACGATTTCATCAGTGGAGAAAAATCGCTTCGTTCCTTACAGTCCGAAAAGACTGCCACGCGAAAAAGAGCCCAAAAGAAAGGTGCTGGGAATTATTTCACTTGCTTTCAGTGTGGAAAGGCTTTCAATCAGCAAGGAAAGCTTAACAGGCACATGAAAATTCACAACAGCTCTCCTCAGTCTGGAACG

Function

GO:

id name namespace
GO:0000439 transcription factor TFIIH core complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250694.1 lncRNA downstream 1219 20142710 ~ 20144488 (-) True LOC122343174
TU44330 lncRNA downstream 1364 20142703 ~ 20144343 (-) False LOC122343174
TU44310 lncRNA downstream 135995 20000988 ~ 20009712 (-) True LOC122343146
TU44247 lncRNA downstream 164984 19980489 ~ 19980723 (-) True G29853
TU44245 lncRNA downstream 165348 19979957 ~ 19980359 (-) True G29851
TU44303 lncRNA upstream 77 20146614 ~ 20147299 (-) False G29889
TU44331 lncRNA upstream 6357 20152894 ~ 20153445 (-) True G29900
TU44337 lncRNA upstream 124569 20271106 ~ 20272289 (-) True G29905
TU44345 lncRNA upstream 156576 20303113 ~ 20311182 (-) True LOC122343168
XR_006250688.1 lncRNA upstream 156670 20303207 ~ 20311190 (-) False LOC122343168
XM_043236063.1 mRNA downstream 62 20145055 ~ 20145645 (-) True LOC122342264
XM_043237503.1 mRNA downstream 142154 20001093 ~ 20003553 (-) False LOC122343146
XM_043237466.1 mRNA downstream 151111 19990684 ~ 19994596 (-) True LOC122343115
XM_043237364.1 mRNA downstream 155619 19981179 ~ 19990088 (-) False LOC122343058
XM_043237446.1 mRNA upstream 1398 20147935 ~ 20150658 (-) False LOC122343109
XM_043237445.1 mRNA upstream 1398 20147935 ~ 20150658 (-) True LOC122343109
XM_043237490.1 mRNA upstream 10618 20157155 ~ 20160273 (-) True LOC122343134
XM_043237465.1 mRNA upstream 18172 20164709 ~ 20166414 (-) True LOC122343114
XM_043236066.1 mRNA upstream 95078 20241615 ~ 20251885 (-) True LOC122342268
unassigned_transcript_380 other downstream 37968 20107657 ~ 20107739 (-) True trnal-cag_24
unassigned_transcript_378 other downstream 38748 20106877 ~ 20106959 (-) True trnal-aag_24
unassigned_transcript_376 other downstream 39520 20106105 ~ 20106187 (-) True trnal-aag_23
unassigned_transcript_375 other downstream 40648 20104977 ~ 20105059 (-) True trnal-cag_23
unassigned_transcript_373 other downstream 41426 20104199 ~ 20104281 (-) True trnal-aag_22
unassigned_transcript_381 other upstream 64019 20210556 ~ 20210638 (-) True trnal-aag_25
unassigned_transcript_382 other upstream 65925 20212462 ~ 20212543 (-) True trnal-aag_26
unassigned_transcript_383 other upstream 66704 20213241 ~ 20213322 (-) True trnal-cag_25
unassigned_transcript_384 other upstream 67712 20214249 ~ 20214332 (-) True trnal-aag_27
unassigned_transcript_385 other upstream 69623 20216160 ~ 20216239 (-) True trnal-aag_28

Expression Profile