RNA id: TU44310


Basic Information

Item Value
RNA id TU44310
length 746
lncRNA type sense_over
GC content 0.34
exon number 3
gene id LOC122343146
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 20000988 ~ 20009712 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CACAGATGGATGGATTTACTATCAGTTCGGTCTTTACTACGTTTCCAATGAGACGAAGAACTGGACTGAGAGCAGAAGATACTGtacagagagaggagcagatcTAGTGATCATAgagaacagacaaaaacaaGATTTCATGAAGAAAATATCCAATGGAAGTGACGTCTGGATTGGTCTGACCGACAGTGAAGTAGAGGGAACATGGAAATGGGTTGATAACAGCACCCTGCCCTCTGGCTCTGGGTTCTGGAAACAAGGAGAACCCAATGGAGGTACAGATGAGAACTGCGCTTTCAGTGGTTCAGCAGGACTGTTTGATTTGACATGTTCTAACCTTTTAAAATGGATCTGCGAGAGGAAAAATATAGAATGACTGTTATGTACAATACTTTTTCAGCCTAAATATTCTAGAAAACTTAAACAACAAAATCTTTTGAgtaattttgacatttacaaTTTTCTCTTAACCGTTAAcctataatgtaaaatgttgtaGCATTTTTAAAGTCTATACAATTTTGAACTCACACTTTTATCATATTTGTTATCTTGCTCGCAGCCCTGTAAAGCTcattaagtatatatttgtataaattacaagcattatttgaatattaaatttatGAAGTGTTTGTAaatttgtgattattaataaaacccCAAAAGTAAAATCCAATTTAAGTCTCTGTCCATATCATAACGGCAGTGacagttttaatgttattttgtaaGTTTAAAAACTA

Function

GO:

id name namespace
GO:1990138 neuron projection extension biological_process
GO:0048588 developmental cell growth biological_process
GO:0048675 axon extension biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44247 lncRNA downstream 20265 19980489 ~ 19980723 (-) True G29853
TU44245 lncRNA downstream 20629 19979957 ~ 19980359 (-) True G29851
TU44240 lncRNA downstream 24847 19975231 ~ 19976141 (-) True G29847
TU44243 lncRNA downstream 27541 19944294 ~ 19973447 (-) True G29849
XR_006250722.1 lncRNA downstream 203731 19796736 ~ 19797257 (-) True LOC122343200
TU44325 lncRNA upstream 35402 20045114 ~ 20196427 (-) True G29896
TU44330 lncRNA upstream 132991 20142703 ~ 20144343 (-) False LOC122343174
XR_006250694.1 lncRNA upstream 132998 20142710 ~ 20144488 (-) True LOC122343174
TU44299 lncRNA upstream 135995 20145707 ~ 20146537 (-) True G29889
TU44303 lncRNA upstream 136902 20146614 ~ 20147299 (-) False G29889
XM_043237466.1 mRNA downstream 6392 19990684 ~ 19994596 (-) True LOC122343115
XM_043237364.1 mRNA downstream 10900 19981179 ~ 19990088 (-) False LOC122343058
XM_043237363.1 mRNA downstream 10981 19981179 ~ 19990007 (-) False LOC122343058
XM_043237365.1 mRNA downstream 10981 19981179 ~ 19990007 (-) True LOC122343058
XM_043236060.1 mRNA downstream 246865 19752414 ~ 19754123 (-) True LOC122342256
XM_043236063.1 mRNA upstream 135343 20145055 ~ 20145645 (-) True LOC122342264
XM_043237446.1 mRNA upstream 138223 20147935 ~ 20150658 (-) False LOC122343109
XM_043237445.1 mRNA upstream 138223 20147935 ~ 20150658 (-) True LOC122343109
XM_043237490.1 mRNA upstream 147443 20157155 ~ 20160273 (-) True LOC122343134
XM_043237465.1 mRNA upstream 154997 20164709 ~ 20166414 (-) True LOC122343114
TU44159 other downstream 1069113 18931536 ~ 18931875 (-) True G29787
XR_006250672.1 other downstream 1083455 18916326 ~ 18917533 (-) True LOC122343130
TU44133 other downstream 1098440 18900565 ~ 18902548 (-) False LOC122343082
TU44045 other downstream 1265348 18724825 ~ 18735640 (-) False LOC122342944
XR_006250670.1 other downstream 1339339 18656980 ~ 18661649 (-) False LOC122343054
unassigned_transcript_306 other upstream 50877 20060589 ~ 20060671 (-) True trnal-aag
unassigned_transcript_307 other upstream 51640 20061352 ~ 20061432 (-) True trnal-cag
unassigned_transcript_308 other upstream 52763 20062475 ~ 20062557 (-) True trnal-aag_1
unassigned_transcript_310 other upstream 53544 20063256 ~ 20063338 (-) True trnal-cag_1
unassigned_transcript_311 other upstream 54673 20064385 ~ 20064467 (-) True trnal-aag_2

Expression Profile