RNA id: XM_043236067.1


Basic Information

Item Value
RNA id XM_043236067.1
length 353
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC122342270
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 20344346 ~ 20346724 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTCGACTCCTATACCCATGAATTCTTTTGTCATCCAGCTGCAACAACCAGtacaaacaacagcaacagctGAGGTTACCACAAATGCTCCAGTGCCTGTCTTTCTCCAACAGATAAAAGGGCTTTCATTTCTTCATGGACTTAAGGCATTTCTAGAAGGCCAACCAAAGGCCCTTGGGACAGTCCAGATAATGATCGGTGTGATGACTTTCCTGTTTGGCATTGTGTCTACAGTTCATGCAGAATCCGTCTTTGTCTTTATTGGTTTACCGTACTGGGGATCTATCACTATGCCAGTGGTCCGCAGCTCTTCTGTGAACCACCAAGAACCCGAATACTGTAattgtgaataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44291 lncRNA upstream 74234 20266836 ~ 20270112 (+) True G29883
XR_006250696.1 lncRNA upstream 154375 20187984 ~ 20189971 (+) True LOC122343176
TU44256 lncRNA upstream 186823 20001067 ~ 20157523 (+) True G29857
TU44250 lncRNA upstream 361452 19981924 ~ 19982894 (+) True G29854
TU44246 lncRNA upstream 363623 19980489 ~ 19980723 (+) True G29852
XR_006250693.1 lncRNA downstream 90941 20437665 ~ 20438508 (+) True LOC122343173
XR_006250679.1 lncRNA downstream 93824 20440548 ~ 20443225 (+) True LOC122343162
XR_006250680.1 lncRNA downstream 93824 20440548 ~ 20443106 (+) False LOC122343162
XR_006250678.1 lncRNA downstream 93824 20440548 ~ 20443007 (+) False LOC122343162
XR_006250699.1 lncRNA downstream 112646 20459370 ~ 20462342 (+) True LOC122343178
XM_043236064.1 mRNA upstream 159848 20183653 ~ 20184498 (+) True LOC122342265
XM_043236062.1 mRNA upstream 298347 20043755 ~ 20045999 (+) True LOC122342262
XM_043237373.1 mRNA upstream 300893 20037933 ~ 20043453 (+) True LOC122343063
XM_043237387.1 mRNA upstream 594272 19745734 ~ 19750074 (+) True LOC122343071
XM_043237388.1 mRNA upstream 594272 19745734 ~ 19750074 (+) False LOC122343071
XM_043237303.1 mRNA downstream 29686 20376410 ~ 20378106 (+) True LOC122343026
XM_043237447.1 mRNA downstream 44741 20391465 ~ 20392374 (+) True LOC122343110
XM_043236068.1 mRNA downstream 96622 20443346 ~ 20446136 (+) True LOC122342274
XM_043236069.1 mRNA downstream 121502 20468226 ~ 20469061 (+) True LOC122342275
XM_043237472.1 mRNA downstream 123946 20470670 ~ 20476708 (+) False LOC122343122
XR_006250910.1 other upstream 96117 20248111 ~ 20248229 (+) True LOC122343930
unassigned_transcript_379 other upstream 237219 20107054 ~ 20107127 (+) True trnam-cau_25
unassigned_transcript_377 other upstream 237991 20106282 ~ 20106355 (+) True trnam-cau_24
unassigned_transcript_374 other upstream 239895 20104376 ~ 20104451 (+) True trnam-cau_23
unassigned_transcript_371 other upstream 241802 20102471 ~ 20102544 (+) True trnam-cau_22
TU44357 other downstream 20951 20367675 ~ 20368816 (+) True G29921
TU44410 other downstream 349948 20696672 ~ 20706846 (+) True G29961
TU44534 other downstream 771838 21118562 ~ 21142831 (+) True G30058
TU44553 other downstream 822525 21169249 ~ 21170595 (+) False LOC122342286
TU44625 other downstream 1021919 21368643 ~ 21761178 (+) False LOC122342301