RNA id: TU44363



Basic Information


Item Value
RNA id TU44363
length 772
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G29927
representative True

Chromosome Information


Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 20497097 ~ 20497868 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


GGAGCATCCAAAATAATGGCAATAGGTTTTGCATCATTTGAGATTTAATCATTGCAGTACTAACAAAATTGGTTcataatgcacattataaagCTCGAAATATTTAAAGcggatttaaataaaatcaaaacacactTTGTTGTTGATGCAGTTGTGTTCTATAACTGTTTAAAGATTCTCAttaataaaattcaattcagCTGTAAAGCCCTATAGATGTCATGATACATGATACTATCTAGAGTGAATCAAGCTCTAGATTATTTCTTACCCGAGGTTTTTCGACCTGACACAGAGAAACCGAGGCTCTAGGATAAAGCCTGAATCCAGCATATAGTGGCTCGGTGAATGTGGTGTTGAacgtgtgtaagtgtgtgagtgtgtgtgtgtcagagatgCAGTAGAAGGACAGAGTCCCAGCCGGCCAATCCAGATATGCTCCTACTCTTTTAGACAGGGTAGGGACAAATTCGGATACATCAGTGTTCTTATTATCGTGCCAGGCGGTACAAACATTGCCTCGGTTAATCCAGAAAAGACACCAGGAATGTTCATTGAGACCAAACAGACAATCAATCCCTTCTTTTCTGCTGACTTTTTTATATGTAACAGCAACATGACCATTGCCGTTGAAttcagtctcccagtaacagcgtccggTCAGAATCTCTTTACACATAACCTGCTCGTAGTGCTCGAACCTCTCTGGATGATCGGGATAGGGTTGCTCCTCTTTGACATGCGTCACTGTTCTGCTCTCAGACATCAAGAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_006250699.1 lncRNA upstream 34755 20459370 ~ 20462342 (+) True LOC122343178
XR_006250698.1 lncRNA upstream 36903 20459370 ~ 20460194 (+) False LOC122343178
XR_006250679.1 lncRNA upstream 53872 20440548 ~ 20443225 (+) True LOC122343162
XR_006250680.1 lncRNA upstream 53991 20440548 ~ 20443106 (+) False LOC122343162
XR_006250678.1 lncRNA upstream 54090 20440548 ~ 20443007 (+) False LOC122343162
TU44381 lncRNA downstream 132952 20630820 ~ 20631329 (+) True G29945
TU44383 lncRNA downstream 147389 20645257 ~ 20645535 (+) True G29947
TU44458 lncRNA downstream 287441 20785309 ~ 20785530 (+) True G30005
TU44456 lncRNA downstream 382581 20880449 ~ 20882908 (+) True G30003
TU44493 lncRNA downstream 412286 20910154 ~ 20975778 (+) True G30024
XM_043237472.1 mRNA upstream 20389 20470670 ~ 20476708 (+) False LOC122343122
XM_043237475.1 mRNA upstream 20389 20472836 ~ 20476708 (+) True LOC122343122
XM_043236069.1 mRNA upstream 28036 20468226 ~ 20469061 (+) True LOC122342275
XM_043236068.1 mRNA upstream 50961 20443346 ~ 20446136 (+) True LOC122342274
XM_043237447.1 mRNA upstream 104723 20391465 ~ 20392374 (+) True LOC122343110
XM_043236074.1 mRNA downstream 7543 20505411 ~ 20515629 (+) True LOC122342276
XM_043237273.1 mRNA downstream 45264 20543132 ~ 20559014 (+) True LOC122343005
XM_043236075.1 mRNA downstream 136016 20633884 ~ 20638611 (+) True LOC122342277
XM_043237404.1 mRNA downstream 142274 20640142 ~ 20644792 (+) False LOC122343085
XM_043237403.1 mRNA downstream 143743 20641611 ~ 20644792 (+) True LOC122343085
TU44357 other upstream 128281 20367675 ~ 20368816 (+) True G29921
XR_006250910.1 other upstream 248868 20248111 ~ 20248229 (+) True LOC122343930
unassigned_transcript_379 other upstream 389970 20107054 ~ 20107127 (+) True trnam-cau_25
unassigned_transcript_377 other upstream 390742 20106282 ~ 20106355 (+) True trnam-cau_24
unassigned_transcript_374 other upstream 392646 20104376 ~ 20104451 (+) True trnam-cau_23
TU44410 other downstream 198804 20696672 ~ 20706846 (+) True G29961
TU44534 other downstream 620694 21118562 ~ 21142831 (+) True G30058
TU44553 other downstream 671381 21169249 ~ 21170595 (+) False LOC122342286
TU44625 other downstream 870775 21368643 ~ 21761178 (+) False LOC122342301
TU44637 other downstream 890325 21388193 ~ 21630120 (+) True G30119

Expression Profile