RNA id: TU44381


Basic Information

Item Value
RNA id TU44381
length 510
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G29945
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 20630820 ~ 20631329 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATTACATACCAACTAATAAGTTACAGAACATTTATCAAACACtgaggaataaataaaaaaaaatgaatatccATATCATAACGTGGAGTAAACAGAAAAgataaaaggcatttaaaaatgaatacaaaaagtGCAAGTAAACTGTTTTCCCCTTTTATTCAGATTTACacacaacaaaactaaattcatacaaatatataaattcatcaatcaaaaaaattatttaaaaagggtTAATACACtagattttgaattaaaaagtcCATCTGACGTCACTGAATGATATACTTTAatcgcacacactcacacacacacacacacacgcgcacactcacacaaaccCCACCTCACCCCGGAGCAGGCCTGAATCGTTGCTCAAGCACGTAGTATCCGTGGAAGCTGAAAACCGGTCTCTTCACTCCTGAGCAGCAGTGAAGAAGTCAACCTGGATGTGTTTATGAACCGATCTCCTGCCGATGTGAGGCACTCCAACAACCCATGTTCTtcaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44363 lncRNA upstream 132952 20497097 ~ 20497868 (+) True G29927
XR_006250699.1 lncRNA upstream 168478 20459370 ~ 20462342 (+) True LOC122343178
XR_006250698.1 lncRNA upstream 170626 20459370 ~ 20460194 (+) False LOC122343178
XR_006250679.1 lncRNA upstream 187595 20440548 ~ 20443225 (+) True LOC122343162
XR_006250680.1 lncRNA upstream 187714 20440548 ~ 20443106 (+) False LOC122343162
TU44383 lncRNA downstream 13928 20645257 ~ 20645535 (+) True G29947
TU44458 lncRNA downstream 153980 20785309 ~ 20785530 (+) True G30005
TU44456 lncRNA downstream 249120 20880449 ~ 20882908 (+) True G30003
TU44493 lncRNA downstream 278825 20910154 ~ 20975778 (+) True G30024
TU44494 lncRNA downstream 281229 20912558 ~ 20934912 (+) True G30025
XM_043237273.1 mRNA upstream 71806 20543132 ~ 20559014 (+) True LOC122343005
XM_043236074.1 mRNA upstream 115191 20505411 ~ 20515629 (+) True LOC122342276
XM_043237472.1 mRNA upstream 154112 20470670 ~ 20476708 (+) False LOC122343122
XM_043237475.1 mRNA upstream 154112 20472836 ~ 20476708 (+) True LOC122343122
XM_043236069.1 mRNA upstream 161759 20468226 ~ 20469061 (+) True LOC122342275
XM_043236075.1 mRNA downstream 2555 20633884 ~ 20638611 (+) True LOC122342277
XM_043237404.1 mRNA downstream 8813 20640142 ~ 20644792 (+) False LOC122343085
XM_043237403.1 mRNA downstream 10282 20641611 ~ 20644792 (+) True LOC122343085
XM_043237203.1 mRNA downstream 23886 20655215 ~ 20677909 (+) True LOC122342964
XM_043237174.1 mRNA downstream 158846 20790175 ~ 20800541 (+) True LOC122342951
TU44357 other upstream 262004 20367675 ~ 20368816 (+) True G29921
XR_006250910.1 other upstream 382591 20248111 ~ 20248229 (+) True LOC122343930
unassigned_transcript_379 other upstream 523693 20107054 ~ 20107127 (+) True trnam-cau_25
unassigned_transcript_377 other upstream 524465 20106282 ~ 20106355 (+) True trnam-cau_24
unassigned_transcript_374 other upstream 526369 20104376 ~ 20104451 (+) True trnam-cau_23
TU44410 other downstream 65343 20696672 ~ 20706846 (+) True G29961
TU44534 other downstream 487233 21118562 ~ 21142831 (+) True G30058
TU44553 other downstream 537920 21169249 ~ 21170595 (+) False LOC122342286
TU44625 other downstream 737314 21368643 ~ 21761178 (+) False LOC122342301
TU44637 other downstream 756864 21388193 ~ 21630120 (+) True G30119

Expression Profile