RNA id: TU44383


Basic Information

Item Value
RNA id TU44383
length 279
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G29947
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 20645257 ~ 20645535 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

caacaacaaaacaagtaCAATATCTCAAATGAAGCTCTAATCAACCTATTCTACCGCTTACTTGAACTCAAGGATCATTCATTATATGAGGAAATACAGAGTTACCTCAGTTCAGAAGAGCATTTAGGAAAAGATCTCTCATCTTCAATGTGCACAGTGCTGACCTACATACTGCTGATATCAGAGAAGGTGCTGGATGAGTTCAACCCAAAGAGGTTTACATCAGAACAATCAAACTACAAGAGACTCATTCCAGCTTTGAGATGCTGCAGAAAAGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44381 lncRNA upstream 13928 20630820 ~ 20631329 (+) True G29945
TU44363 lncRNA upstream 147389 20497097 ~ 20497868 (+) True G29927
XR_006250699.1 lncRNA upstream 182915 20459370 ~ 20462342 (+) True LOC122343178
XR_006250698.1 lncRNA upstream 185063 20459370 ~ 20460194 (+) False LOC122343178
XR_006250680.1 lncRNA upstream 202151 20440548 ~ 20443106 (+) False LOC122343162
TU44458 lncRNA downstream 139774 20785309 ~ 20785530 (+) True G30005
TU44456 lncRNA downstream 234914 20880449 ~ 20882908 (+) True G30003
TU44493 lncRNA downstream 264619 20910154 ~ 20975778 (+) True G30024
TU44494 lncRNA downstream 267023 20912558 ~ 20934912 (+) True G30025
XR_006250691.1 lncRNA downstream 325975 20971510 ~ 20972249 (+) True LOC122343171
XM_043237404.1 mRNA upstream 465 20640142 ~ 20644792 (+) False LOC122343085
XM_043237403.1 mRNA upstream 465 20641611 ~ 20644792 (+) True LOC122343085
XM_043236075.1 mRNA upstream 6646 20633884 ~ 20638611 (+) True LOC122342277
XM_043237273.1 mRNA upstream 86243 20543132 ~ 20559014 (+) True LOC122343005
XM_043236074.1 mRNA upstream 129628 20505411 ~ 20515629 (+) True LOC122342276
XM_043237203.1 mRNA downstream 9680 20655215 ~ 20677909 (+) True LOC122342964
XM_043237174.1 mRNA downstream 144640 20790175 ~ 20800541 (+) True LOC122342951
XM_043237448.1 mRNA downstream 256684 20902219 ~ 20906726 (+) True LOC122343111
XM_043237467.1 mRNA downstream 272015 20917550 ~ 20918689 (+) True LOC122343116
XM_043236078.1 mRNA downstream 275900 20921435 ~ 20929163 (+) True LOC122342280
TU44357 other upstream 276441 20367675 ~ 20368816 (+) True G29921
XR_006250910.1 other upstream 397028 20248111 ~ 20248229 (+) True LOC122343930
unassigned_transcript_379 other upstream 538130 20107054 ~ 20107127 (+) True trnam-cau_25
unassigned_transcript_377 other upstream 538902 20106282 ~ 20106355 (+) True trnam-cau_24
unassigned_transcript_374 other upstream 540806 20104376 ~ 20104451 (+) True trnam-cau_23
TU44410 other downstream 51137 20696672 ~ 20706846 (+) True G29961
TU44534 other downstream 473027 21118562 ~ 21142831 (+) True G30058
TU44553 other downstream 523714 21169249 ~ 21170595 (+) False LOC122342286
TU44625 other downstream 723108 21368643 ~ 21761178 (+) False LOC122342301
TU44637 other downstream 742658 21388193 ~ 21630120 (+) True G30119

Expression Profile