RNA id: TU44410


Basic Information

Item Value
RNA id TU44410
length 2091
RNA type TUCP
GC content 0.42
exon number 2
gene id G29961
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 20696672 ~ 20706846 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCAAAAGTGCACACAATACAATCAATGCAGTGTAATAAAACTACAACTATGAAAGTAAAtacatgataaaaatatataaaatacaaaaactaaataattttaacactACAATTTCAGTTTTAGATACATCAATATAATCTGTAAAGGGtctattatacatttacaatatcaacaaaatatTCTGCTTTTGGTAAATAAACAGGGTGCGTTCTCTGCCGTCTCAGTAGCACAGTGATGTTCAGTCTGAAACTGGTCAATAAAATTAACTGTAACTCAGCGAAAACATGACTCACAGACATGAAAGATATCTAAAAGTTAGTATTGTCCAAAACAAATGAGATAAAGTTATCAGTATAAAACCTACACCATGTCCAAAGCGTAAGGATTAATCTAGTTCATACTGTTAGTTTCGGCAAGAAGACAGGAATAACTCTGGATTTACTTCATTAAAGACGAGttgtaaaataacagaaaaaatgtagctgaatgaaatatgaatttacCTCAAGAAGCAATTCACAAGCTAATGCAGCCACTGACTAACCAGTCTAAGGAGTAAGTAATGTTAATCTTTAGTCTACCTGTTATAGTGGCATAAACCTGAACAAATTTATTGGTTTGGTTTTTCCTgaactaaaatatttgtaatcgAGTGATATGTTTTGAACATAACAGGTACTTAATTGTATCTAAATTTCTTAAGACACAATGATAAAACATTCCGACAGGTCGAAGGGACTCAGAGGGGTCCTGAGACACGATGCCagtggagactggcagacccgtggtgAATTCAGCACACCGGCGGTGGGCTCAGAGGGAGAGCAGGAACGTGCGGGAGGGTGGTAATATTTGCAACTCCTCTGGACTTAACACTTGAGGGCACTCTTGAGGAGCAGGGGCTGGGGGGTGCCTATGAGGCGCTGCCATTGAAAAGCACTCTTGAGTAGCAGGCACTGGAGGGCTCTCTGGAAGCGAGGAGCCCCTTCTGGGCTGGAAGGACTTGCAGAGATGAAGGAGAAAGGAATGGGGCAGGACGGAACTCCAGTTCGCTTTCAAAATCTATTAGATCAATTTCTTTCTCTTGTAATCCCACTAGCTGCACTAAATGCACTAGCTGATCACCCTCAGCCATGGTGCAGTGGGCAGAGCTTCTCTCCCTATTCTCGCTGAAGCTCTCTGTTGCCAGCTCTCGCTCCTGGTCTGACGTCATGTGGTTAGGGTAAGAGGGTTTCCTCAACCCAATTCAGTACATCACATGGACTTTACATGATCGCTTTGGAATTTAGCAGGTCTTAAAATCGTGTCATGTATATGAATGGAAGTCAGTGGAGCAAAATGTGCAGTGTGACTGTTAAGCAGCATTTTCATACTCTGTCGAGTCTTGTTTTGCCCTGGCCAACAATTCTGAGCATTCATATCATCCTTCTGCTTCCTTTGTGTATGATTCTGGACCGTTTCTCTACCTCTGATTGCTTGCAGCCTGCCCCTTTGATCCTGTGTGAACTGCCAAAGGTGtgccctccttttgggtctctgaatgtgttccagccaggtgtgaccctggagcacagaaACCTGAacacaaaaggtttttacaactacatttgggatctcattgtctggtctgagtatataaggaaagtgacaaaacacaacaaggcgcgattctgtagccagaccggcccgtagtgtggtgtgtgtccccaTACtccacactatgtactttctcaagaccaggtataatgaccttttaagttttttttattttgtgttatttttgtactgcggaatgttagagttgaatgttgacagttatgcacctgtggcccttttagtttcagtttgattcttggtcataacatggcctccgtataatactgatagggccaccggaagaatctgaaggagtgaagattctgacgcacaagaaatgtggccaattgttttcatttactgtatcttgtcctttcctctataaataaagtgacttgtgacctgagcttcggaggcaaagcaGGCAAAAGCAGGGAGGTTacggagaaacctgcttctctcccgcttgcaatcgacagcgcaatccttgcaagc

Function

GO:

id name namespace
GO:0042611 MHC protein complex cellular_component
GO:0042613 MHC class II protein complex cellular_component

KEGG:

id description
ko04658 Th1 and Th2 cell differentiation
ko04659 Th17 cell differentiation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44383 lncRNA upstream 51137 20645257 ~ 20645535 (+) True G29947
TU44381 lncRNA upstream 65343 20630820 ~ 20631329 (+) True G29945
TU44363 lncRNA upstream 198804 20497097 ~ 20497868 (+) True G29927
XR_006250699.1 lncRNA upstream 234330 20459370 ~ 20462342 (+) True LOC122343178
XR_006250698.1 lncRNA upstream 236478 20459370 ~ 20460194 (+) False LOC122343178
TU44458 lncRNA downstream 78463 20785309 ~ 20785530 (+) True G30005
TU44456 lncRNA downstream 173603 20880449 ~ 20882908 (+) True G30003
TU44493 lncRNA downstream 203308 20910154 ~ 20975778 (+) True G30024
TU44494 lncRNA downstream 205712 20912558 ~ 20934912 (+) True G30025
XR_006250691.1 lncRNA downstream 264664 20971510 ~ 20972249 (+) True LOC122343171
XM_043237203.1 mRNA upstream 18763 20655215 ~ 20677909 (+) True LOC122342964
XM_043237404.1 mRNA upstream 51880 20640142 ~ 20644792 (+) False LOC122343085
XM_043237403.1 mRNA upstream 51880 20641611 ~ 20644792 (+) True LOC122343085
XM_043236075.1 mRNA upstream 58061 20633884 ~ 20638611 (+) True LOC122342277
XM_043237273.1 mRNA upstream 137658 20543132 ~ 20559014 (+) True LOC122343005
XM_043237174.1 mRNA downstream 83329 20790175 ~ 20800541 (+) True LOC122342951
XM_043237448.1 mRNA downstream 195373 20902219 ~ 20906726 (+) True LOC122343111
XM_043237467.1 mRNA downstream 210704 20917550 ~ 20918689 (+) True LOC122343116
XM_043236078.1 mRNA downstream 214589 20921435 ~ 20929163 (+) True LOC122342280
XM_043236079.1 mRNA downstream 311306 21018152 ~ 21020872 (+) True LOC122342283
TU44357 other upstream 327856 20367675 ~ 20368816 (+) True G29921
XR_006250910.1 other upstream 448443 20248111 ~ 20248229 (+) True LOC122343930
unassigned_transcript_379 other upstream 589545 20107054 ~ 20107127 (+) True trnam-cau_25
unassigned_transcript_377 other upstream 590317 20106282 ~ 20106355 (+) True trnam-cau_24
unassigned_transcript_374 other upstream 592221 20104376 ~ 20104451 (+) True trnam-cau_23
TU44534 other downstream 411716 21118562 ~ 21142831 (+) True G30058
TU44553 other downstream 462403 21169249 ~ 21170595 (+) False LOC122342286
TU44625 other downstream 661797 21368643 ~ 21761178 (+) False LOC122342301
TU44637 other downstream 681347 21388193 ~ 21630120 (+) True G30119
TU44630 other downstream 932694 21639540 ~ 21641756 (+) True G30115

Expression Profile