RNA id: TU44456


Basic Information

Item Value
RNA id TU44456
length 1787
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G30003
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 20880449 ~ 20882908 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

atttgacgcTTCGAGTTAATGATATGAATGGCTACAGTTTTATTAGGTTGCTGTCACATTACAAATTATGCCTTAATTCagtatactgaaaaaaaaaaaatatcgcTTTAACTCAAATATCTTGGTTTTTATAGTCcttggaagaagaaaaaataaacatgagatGTTCCAAAAAATAACTAGTCATTTTAACAATGAAGAACACAATCAAACAGTCTCTCTTAAAAGTGTTACAGCCCCTTCTTCAGCTTCCTCAACAAAAACAGGTGGAAAAAGCTTTTGCTTtccttctttaaaaatgaagaatactGCAAGTgacatacattataaaaacatctgAACAATATATGACATTCGTAAGTACAAAAGTACAATGATATCATTCACATCACAAAGCAAAATGATACACAAGAATACATTGCCCTTTGGGGAGGAACTCCatctttgagttttttttgtagACTGCGTAGAGCAGGTGATTGATACCCTTCCTGCATACAGTGCAGTGATAAGGTTTCTCTCCACTGTGAATCctttaaatgtcttttcagACGTGATGAACGACTGATTCTCTCGTTTCACtctaaacactttttaaaggtTTCACTCCAGTGTTTTCATGTCTTCGAAGGTCTCCTGAAAAACCGAATCTCTTATCGCAATGTGAACATGAataaggtttctctccagtgtggatcctcacatgcattttcagatgtgctgactgactgaatctcttgtcacagtgtgaacaTTTGTAAGGTTTCACTCCAGTGTGAATGCTCTCATGTGTTTTCAGGTCTCTTGACTTTTTGTAtctcttgtcacagtgtgaacacttgtaatttttttctccagtgtggaCCAACTCATGTGATTTCAGATGTGCTGACCGAGTGAAtctcttgtcacagtgtgaacacttgtaaGGTTTAACTCCAGTGTGGGTTTTCTCATGGCTTTTAAGAACCCCTAAAACACTATATTGTTTATTGCACTGTGCACATTTATaaggtttttctccagtgtggatcaTCTCATGTGCTTTCAGATGTGCTGACCGACTGAAtctcttgtcacagtgtgaacacttgtaGGGTCTTTCTCCATTGTGGATCATCTCATGTGTTTTCAGATGTGCTGACCGACTGAAtctcttgtcacagtgtgaacacttgtaGGGTctttctccagtgtggatcaTCTCATGTGTTTTCAGATGTGCTGACCGACTGAATCTCTTATTACAGTGTGAACACTTAAAgggtttttctccattctgaaTACTCTCATGCAGTTTTGTACACCTCGCTGAAGTAAAAGTCTTTTCACACTCAAAGCACAGGTACTCTCCCACAGAAGTGTTTTTCTGACCTTCTTTCCAATTTTGTAGACGCACAAAGCTGATACCACACAAATTGCATGAATGTTGCTTCTCTTTTGAATGAACTTCTAAGTGTTTCTTCAGAATCGAAgcccataaaaacattttaccacaCTGATCACAAGGGTGCTGCTGCTCTCTAGTGTGGATGTTCATGTGATCATTAAGGCTTGCTGATTGAGTGAAAATCTTCCCACACTGAACTTTCATGTGACGCTCAAGACTTATTTTGCGTGTGAAACTCTTTTCACACTGAGTGCAGGTGAAACATTTTGtgtctcttcttttctttaaatctttcaGTTTGGTTTGAGAGCAACTCAGacatttttcttctattttgaCATGATTTTTCTCCTCAGCTTCATTTGATTCTTCATTCTTATCTTTTTCTTCAATCaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44458 lncRNA upstream 94919 20785309 ~ 20785530 (+) True G30005
TU44383 lncRNA upstream 234914 20645257 ~ 20645535 (+) True G29947
TU44381 lncRNA upstream 249120 20630820 ~ 20631329 (+) True G29945
TU44363 lncRNA upstream 382581 20497097 ~ 20497868 (+) True G29927
XR_006250699.1 lncRNA upstream 418107 20459370 ~ 20462342 (+) True LOC122343178
TU44493 lncRNA downstream 27246 20910154 ~ 20975778 (+) True G30024
TU44494 lncRNA downstream 29650 20912558 ~ 20934912 (+) True G30025
XR_006250691.1 lncRNA downstream 88602 20971510 ~ 20972249 (+) True LOC122343171
TU44529 lncRNA downstream 234753 21117661 ~ 21118522 (+) True G30056
XR_006250684.1 lncRNA downstream 243177 21126085 ~ 21126420 (+) True LOC122343166
XM_043237174.1 mRNA upstream 79908 20790175 ~ 20800541 (+) True LOC122342951
XM_043237203.1 mRNA upstream 202540 20655215 ~ 20677909 (+) True LOC122342964
XM_043237404.1 mRNA upstream 235657 20640142 ~ 20644792 (+) False LOC122343085
XM_043237403.1 mRNA upstream 235657 20641611 ~ 20644792 (+) True LOC122343085
XM_043236075.1 mRNA upstream 241838 20633884 ~ 20638611 (+) True LOC122342277
XM_043237448.1 mRNA downstream 19311 20902219 ~ 20906726 (+) True LOC122343111
XM_043237467.1 mRNA downstream 34642 20917550 ~ 20918689 (+) True LOC122343116
XM_043236078.1 mRNA downstream 38527 20921435 ~ 20929163 (+) True LOC122342280
XM_043236079.1 mRNA downstream 135244 21018152 ~ 21020872 (+) True LOC122342283
XM_043237284.1 mRNA downstream 156872 21039780 ~ 21044018 (+) False LOC122343014
TU44410 other upstream 173603 20696672 ~ 20706846 (+) True G29961
TU44357 other upstream 511633 20367675 ~ 20368816 (+) True G29921
XR_006250910.1 other upstream 632220 20248111 ~ 20248229 (+) True LOC122343930
unassigned_transcript_379 other upstream 773322 20107054 ~ 20107127 (+) True trnam-cau_25
unassigned_transcript_377 other upstream 774094 20106282 ~ 20106355 (+) True trnam-cau_24
TU44534 other downstream 235654 21118562 ~ 21142831 (+) True G30058
TU44553 other downstream 286341 21169249 ~ 21170595 (+) False LOC122342286
TU44625 other downstream 485735 21368643 ~ 21761178 (+) False LOC122342301
TU44637 other downstream 505285 21388193 ~ 21630120 (+) True G30119
TU44630 other downstream 756632 21639540 ~ 21641756 (+) True G30115

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU455466 True 944 lncRNA 0.39 2 CI01000238 25620 ~ 26647 (-)