RNA id: TU44494


Basic Information

Item Value
RNA id TU44494
length 1799
lncRNA type read_through
GC content 0.39
exon number 2
gene id G30025
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 20912558 ~ 20934912 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAATTACTCACAGTGCTTTTCTGCAGCATTTCACAGCTGACAAGAGTATAGCGGAATTTGAAGATGATGATGTGAACCTCTTTGGGTTGAACTCATCCAGCACCTTCTCTGATATCAACAGTATGTAGGTCAGGACTGTGCACATTGAAGATGAGAGATCTCTTTCTGGATGTTCATCTGAACTGAGGTAACTCTGGATTTCCTCATATATTGAATGATCCTTGAGTTCAAGTAAGCAGTAGAATAGGTTGACTAGAGCTTCATCTGAGATATTGtgcttgttttgttcttgtttaatGTATTCACTTATTTTTGAGAGACTCTCTGTGGAGTCTTCGTTGTGTTGGAACAGGCCTTTAAGCAGGTGTTGACTGGATTTCAGTGAAATGCCCAACAAAAACCGTAGGAACAGGTCCAGATGTCCTCTcttattgttcatgtttttttcaatagCCTTCTGCAGTAACGTCTCCATTGTTATATTTTCTTCTGGCtcatcaaagaaaaactgaagctCCTGCATGTTCTTGTTCAGATAGCAGATGaacacatgcactgcagcaAGAAACTCTTGAACACTCAGATGCACAAAGCAGAAGACCTTTGCTCCATGAATTCCATGTTCCCTTTTGAAGATCTCAGCAATCATTCCTGTGAACTCAATGTCTTTACTCGCATCAATACCACATTCTTTTAGATCATCCTTatagaacacaatgttttccttttttagctGTTCAAATGCTAACTTGgctaatttcaaaataatttcccTGTTTGCTTCTAAGTGTTCTATGAATTCTCTTTCTTCTTGTTCTTCATATTTCTGGTTCTTCATGTCCATCTGTATAAGcaggaagtgaatgtacatttcagtgagtGTTGTGCTGATCTTCACTTCACTGTTCTCAGTGAGAATATCCTGAAGTACTGTGGctgtgatccagcagaacacaggaatgtggcacatgatgtagagactacgagacgtcttaatgtgtgagatgattctggaggACAGACTCTCATCTTTGATTCTCTTTCTGAAGTACTTCTCCTTCTGTTGGTCAGTGAATCCTCGCACCTCTGTAAACAAACCCACATACCGAGgaggaatctgattggctgctgctggtcgtgATGTGACCCAGACAAGAGCTGATGGAAGCAGAGTTCCTTTGACCAGACTTGTAAAGAGCACATCTACAGATGCTTTTTTCTCAGTAGTTTTCATTGATTTCCATCTAAAATTTAGAGGCAGCCGACTctcatcaagtccatcaaatataaatgctagCTTACATCCCTTATATAGCTTTGATTTCTCCAGGTTCTCCAGGTCAGGATAAAATTCCAGCAGAAACTCATGGAGACTGAAATCTTCAtttgtcattaaattaatttctctgaatggaagcagaaacacacagtgaATATCCTGGTTAGATTCTCCTTCtgcccagtccaggatgaacttgtgcacagagacagtttttcctATGCCAGCGACTCCTTTGGTCAGCACAGTATTTTTCTGACTGTTTTTCCTCagttcagtaaatatatcattgcatttgatcggtttgtcctgtgtttttttaatcttaaaagcATCATCAATCTTCAGAATCTCATGTTCGTGATTGACCTCTTTCATATCTCCTCTGTAATGAACAGATCTGTGTAAACAGCCTTGAGttgtgcttcattttctttgtttccttcaaaaatacatttagctttattcttcatgtttgttttgtgagattcaaaaaagttttgcagctctCCAACAGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44456 lncRNA upstream 29650 20880449 ~ 20882908 (+) True G30003
TU44458 lncRNA upstream 127028 20785309 ~ 20785530 (+) True G30005
TU44383 lncRNA upstream 267023 20645257 ~ 20645535 (+) True G29947
TU44381 lncRNA upstream 281229 20630820 ~ 20631329 (+) True G29945
TU44363 lncRNA upstream 414690 20497097 ~ 20497868 (+) True G29927
XR_006250691.1 lncRNA downstream 36598 20971510 ~ 20972249 (+) True LOC122343171
TU44529 lncRNA downstream 182749 21117661 ~ 21118522 (+) True G30056
XR_006250684.1 lncRNA downstream 191173 21126085 ~ 21126420 (+) True LOC122343166
XR_006250727.1 lncRNA downstream 196242 21131154 ~ 21133602 (+) True LOC122343205
XR_006250681.1 lncRNA downstream 228844 21163756 ~ 21167242 (+) True LOC122343163
XM_043237448.1 mRNA upstream 5832 20902219 ~ 20906726 (+) True LOC122343111
XM_043237174.1 mRNA upstream 112017 20790175 ~ 20800541 (+) True LOC122342951
XM_043237203.1 mRNA upstream 234649 20655215 ~ 20677909 (+) True LOC122342964
XM_043237404.1 mRNA upstream 267766 20640142 ~ 20644792 (+) False LOC122343085
XM_043236079.1 mRNA downstream 83240 21018152 ~ 21020872 (+) True LOC122342283
XM_043237284.1 mRNA downstream 104868 21039780 ~ 21044018 (+) False LOC122343014
XM_043237283.1 mRNA downstream 104869 21039781 ~ 21044018 (+) True LOC122343014
XM_043237194.1 mRNA downstream 120580 21055492 ~ 21066850 (+) False LOC122342958
XM_043237195.1 mRNA downstream 120581 21055493 ~ 21066850 (+) False LOC122342958
TU44410 other upstream 205712 20696672 ~ 20706846 (+) True G29961
TU44357 other upstream 543742 20367675 ~ 20368816 (+) True G29921
XR_006250910.1 other upstream 664329 20248111 ~ 20248229 (+) True LOC122343930
unassigned_transcript_379 other upstream 805431 20107054 ~ 20107127 (+) True trnam-cau_25
unassigned_transcript_377 other upstream 806203 20106282 ~ 20106355 (+) True trnam-cau_24
TU44534 other downstream 183650 21118562 ~ 21142831 (+) True G30058
TU44553 other downstream 234337 21169249 ~ 21170595 (+) False LOC122342286
TU44625 other downstream 433731 21368643 ~ 21761178 (+) False LOC122342301
TU44637 other downstream 453281 21388193 ~ 21630120 (+) True G30119
TU44630 other downstream 704628 21639540 ~ 21641756 (+) True G30115

Expression Profile