RNA id: TU44580


Basic Information

Item Value
RNA id TU44580
length 1549
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id G30085
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 21311555 ~ 21337024 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tatttCTCCTTGTTTACCTGTCACCCCCATCCCCTGATAAAAGGGTCGAAAAAAGACCACGTGTTTGTGGTTTGCAGTGCAACAACACCTTTGTACGAGGCATGAGTGTTCACAAACATGGACTACTGCACTACTCACTATTTACCAACACTCTAAGCTGAACTGCATCAATGACTCAGCGCTCACTTACTCTGCTGTTTCCTCAAACTCTTTGTATAGGAACTTGACGTTATTTTAGCCTTGATCAAAGTACTATGTCTGCCATGTAGTGGTAGGAAATACAAATAAGGTATAACACCATATTAGGAACTGAAGTCTGTTTTATTAAGTATGACGTTGTCACAATTTTGCGACTTTGGCACTGAGTGGGttcaactgaaatatgcaataaacattaaatttaacaacattagataaGAAGAACTAATAAGAAACtgtgacaataataataataataataataataaaccatcaAATTCAgactaaatttgaaatgcaatgcagggaattctgggaatttCACAGgaattaaccatttaacagatttttactgtagcattttcacagtttttttctgttaaaatcaagGCCACAGTGTACTTTGAGTAGTTTAAAATTGTGTACttttacacaaatacattttttgttgtaattgtaCTTTTACCTGTTTGTGATTGTTAAATGCATGTATTCCGTTTATTTTTATCCATCAGCATGCAGCATCAACTGCTGTTAATCATgccacagtattttattttgagttttgtcATAGCTACGACCAGCTTTAAGTTTGTTCACATGTACAGACAGTTGCACCACATGATGTTTTGAAAGTGTGAGatacatattattttgtgttttatcagtttaaatgtacaaaaaatgttttcaattaaatgtatttcatcaAATACAATGACGTCAATAAagtatcaaattattttaaaattataacacggacaaattatttatgaatataaatccATGGCAAAACCTGATGGAGGTGGGGCAATGCAGCTGTAGATAATTTTTGCCACATGTcattcttttgattttttttttactcttaaataAGGTCTACTGTATGGTTGAAGAATCACTTAAAGTGATAAAAGGAaattttgatattatttcattatcataataataataataataataataataataatagtaataaaaaactgaattaaacaaaTCCCAGGTTTTCTAAGACATTTCAGAACCCTGATTGTTTTCTCATCAGTGAGAAAAAATCACACTGATGCAATCATACAACAGAGGAGGAGGAATATCTGCTCACTAtgaaatacattcatacacataCTTTAACGTATTAATTCAGTTCATGTAAAATTTCAAACCTCAGTATGTTCAGTCGACAGtgtggactcttcagtccatcagaaagcagcttcactcctgaatctcctgggtgattgtagctcagatccagctctctcaggtgtgaggggtttgaattcagagctgaagacacataacgacagccttcctctgtcaccatacagccagacaacCTACAAAAACA

Function

GO:

id name namespace
GO:0000041 transition metal ion transport biological_process
GO:0006826 iron ion transport biological_process
GO:0047372 acylglycerol lipase activity molecular_function

KEGG:

id description
ko04216 Ferroptosis
ko04978 Mineral absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44588 lncRNA upstream 10548 21276110 ~ 21301007 (+) True G30090
TU44570 lncRNA upstream 63130 21248187 ~ 21248425 (+) True G30077
XR_006250681.1 lncRNA upstream 144313 21163756 ~ 21167242 (+) True LOC122343163
XR_006250727.1 lncRNA upstream 177953 21131154 ~ 21133602 (+) True LOC122343205
XR_006250684.1 lncRNA upstream 185135 21126085 ~ 21126420 (+) True LOC122343166
TU44624 lncRNA downstream 32398 21369422 ~ 21374537 (+) True G30110
TU44661 lncRNA downstream 142533 21479557 ~ 21522253 (+) True G30132
TU44664 lncRNA downstream 148688 21485712 ~ 21527011 (+) True G30133
TU44666 lncRNA downstream 159799 21496823 ~ 21498381 (+) True G30134
TU44668 lncRNA downstream 161840 21498864 ~ 21499514 (+) True G30136
XM_043236086.1 mRNA upstream 5919 21292312 ~ 21305636 (+) True LOC122342289
XM_043237205.1 mRNA upstream 81451 21222570 ~ 21230104 (+) True LOC122342966
XM_043237206.1 mRNA upstream 81451 21222570 ~ 21230104 (+) False LOC122342966
XM_043237207.1 mRNA upstream 83098 21222570 ~ 21228457 (+) False LOC122342966
XM_043237243.1 mRNA upstream 125420 21182237 ~ 21186135 (+) True LOC122342986
XM_043237468.1 mRNA downstream 40514 21377538 ~ 21379639 (+) True LOC122343117
XM_043236090.1 mRNA downstream 61793 21398817 ~ 21400148 (+) True LOC122342293
XM_043236091.1 mRNA downstream 110216 21447240 ~ 21449510 (+) True LOC122342295
XM_043237315.1 mRNA downstream 112493 21449517 ~ 21452862 (+) True LOC122343031
XM_043237301.1 mRNA downstream 307295 21644319 ~ 21650178 (+) False LOC122343024
TU44553 other upstream 140960 21169249 ~ 21170595 (+) False LOC122342286
TU44534 other upstream 168724 21118562 ~ 21142831 (+) True G30058
TU44410 other upstream 604709 20696672 ~ 20706846 (+) True G29961
TU44357 other upstream 942739 20367675 ~ 20368816 (+) True G29921
XR_006250910.1 other upstream 1063326 20248111 ~ 20248229 (+) True LOC122343930
TU44625 other downstream 31619 21368643 ~ 21761178 (+) False LOC122342301
TU44637 other downstream 51169 21388193 ~ 21630120 (+) True G30119
TU44630 other downstream 302516 21639540 ~ 21641756 (+) True G30115
TU44767 other downstream 894446 22231470 ~ 22231924 (+) True G30218
TU44785 other downstream 959873 22296897 ~ 22301519 (+) False LOC122342310

Expression Profile