RNA id: TU44748


Basic Information

Item Value
RNA id TU44748
length 1947
lncRNA type inter_gene
GC content 0.36
exon number 4
gene id G30205
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 22141344 ~ 22255433 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCCTGCTGTGCATCCAATGTCATGCTTCTCTATGACGTCCCAGATCTGAGTCTGACTTAGTCTGTTCTTGTTGAGGACATGCACAGCCTTATCATACCACCAGACCAACTTTAGATCCAGGATCTCCAGTTATCTGCAGCTTGACTTCATCTCCTGTGGCATATGTGTCCTCTGTCTTGTCCTTTAACTTAAGGTTgagctgtaataataataataaatgacactgCACTCTTAGGGACCACGGAGGTACAATTTTGTTCCTAtgggaacaaaacatttaattgtatcCTAAGGACCTATTGCATACATataaaggtcccatattgtacACCTTCTTGGAGTTTTATATTAGGTGTTGATGTCCTAAAGAATCTATATTGCCCTAGACCTAATTTATGATGAAATATGGGGCCCTTTAAAGGTACCATTATGTACCCACaatgtgttttaaaagcagAGGTGGCAAATCCAGGTTCAGGTTTTGTTCCAATCATCAGGATTTGCTAATAAACAGATGTGCGACCAAGTCATTCCTTTCAAGTCACAAGCAAGTCTCAAGTCAAATCCCAGTCTTTAAAGTCTTGTTTCTCATTAgtcattaactaatgttaatgaTATAATTAAGAGACAAATTAAATGACGATTGTGGATTAGTGAGGAATACCTTCTGTTTACAATGAGCATCAGTGAAGAAGAGAGGAAATCAActgaaatagataaataaaaagcaccAGCGATACGATATTTGCAGATACCGATACTGATTCGATTATTTTGATGCTACATGCCTAGTTTACATGAGcagttatatttttaactacaactacattgccaacaaaatgcatttaattttttaaattgcatttataataaaaatcttaccaaaacattattctttttaaataaagaaaagtaaatagggggaaaataaataatgtcacaGTCGAAGCCTTCAGTATTTACTGCCAAACACATCTAACATTTGCTCTGTCACAGATCTAACAGTTAAATTTCCTTCGAAAAATCAATTGATCAACGTTTTCAACATtggcaaatgcaaaatattaaaaggacATGGGGAGTGTCAAAATAAAGGTATCGCATACCAATTTTTTACATGTGGCGTCAATGCAATTTAGTGGATATCGATTTTGAGGTATTGTTACACCCCTAATGATAATTGTgtcatcatattaaaatatataatatatatatatatatatatatatatatatatatatatatatatatatataaaaccactAATCAGTTCAGTAATCTCTGTTTTTCAACAGCTTGGGTATTGCTACAGACCGAGACCTAACAGAGGAGTCAGGAGCTCagctaaaacaaacactgatctCTATGATGGtgatatcattttaaacaataaaacatcaacatcTTATCCTCTGTAATTCTCAGTAACAGCAGGTCTTCATTACTAATGCACAagcattgtttaattaattatctcattaacttcAACTCTTTGAGGACTCAGGATTTGACTCGAGACCAGCTTGTGACTTTAAAGGAATGACTGGTTAAATCAGCGGCTGAGTTTATGGctagaataaaaatatgacttcTACTTCCTGACCTCTGCTTAAAGGAACAACTAGAGATACAAAACTGTACCCTTCAGGGGACCACACCAGTGACGGCCACTTGTACCATAAAAGGTACCGATTTGTACCTTTATTCTGAGAGTAGTTCTTTGGCACTTCATCAATTTTTTGTGATTGTTGACCCACCGTTTCCATGCACGTGTCTGTCACATCGAGCCTGACTGAATCAGACACCACCTCATTCCAGCCCACATGATAATATGCCAAAAAGCGAAACGACGGCACCATGTCTTTGGTTACAAGCAGAGACAAAGACACTAGAGACTGTTCTTCCCTCTTATACCTGTTTACTTGAACGATCTGACCTTTACTCAA

Function

GO:

id name namespace
GO:0048732 gland development biological_process
GO:0061008 hepaticobiliary system development biological_process
GO:0001889 liver development biological_process

KEGG:

id description
ko04610 Complement and coagulation cascades

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44657 lncRNA upstream 330060 21749010 ~ 21811284 (+) True G30130
TU44614 lncRNA upstream 419434 21333245 ~ 21721910 (+) True G30104
TU44664 lncRNA upstream 614333 21485712 ~ 21527011 (+) True G30133
TU44661 lncRNA upstream 619091 21479557 ~ 21522253 (+) True G30132
TU44668 lncRNA upstream 641830 21498864 ~ 21499514 (+) True G30136
TU44782 lncRNA downstream 18378 22273811 ~ 22280970 (+) True G30233
XR_006250710.1 lncRNA downstream 51362 22306795 ~ 22311420 (+) True LOC122343188
TU45148 lncRNA downstream 84729 22340162 ~ 22344814 (+) True G30480
XR_006250708.1 lncRNA downstream 162494 22417927 ~ 22419692 (+) True LOC122343186
TU45205 lncRNA downstream 249822 22505255 ~ 22506192 (+) True G30526
XM_043237344.1 mRNA upstream 33887 22105236 ~ 22107457 (+) True LOC122343041
XM_043237385.1 mRNA upstream 36412 22103318 ~ 22104932 (+) True LOC122343067
XM_043236100.1 mRNA upstream 299114 21841181 ~ 21842230 (+) True LOC122342305
XM_043237329.1 mRNA upstream 326907 21809156 ~ 21814437 (+) True LOC122343035
XM_043237293.1 mRNA upstream 332265 21673802 ~ 21809079 (+) True LOC122343020
XM_043236103.1 mRNA downstream 41464 22296897 ~ 22305148 (+) True LOC122342310
XM_043236104.1 mRNA downstream 148620 22404053 ~ 22405822 (+) True LOC122342312
XM_043237291.1 mRNA downstream 178621 22434054 ~ 22446278 (+) False LOC122343018
XM_043237290.1 mRNA downstream 178626 22434059 ~ 22446278 (+) True LOC122343018
XM_043237494.1 mRNA downstream 293184 22548617 ~ 22561763 (+) True LOC122343138
TU44625 other upstream 380166 21368643 ~ 21761178 (+) False LOC122342301
TU44630 other upstream 499588 21639540 ~ 21641756 (+) True G30115
TU44637 other upstream 511224 21388193 ~ 21630120 (+) True G30119
TU44553 other upstream 970749 21169249 ~ 21170595 (+) False LOC122342286
TU44534 other upstream 998513 21118562 ~ 21142831 (+) True G30058
TU44785 other downstream 41464 22296897 ~ 22301519 (+) False LOC122342310
XR_006250667.1 other downstream 406393 22661826 ~ 22682712 (+) False LOC122343019
TU45293 other downstream 522609 22778042 ~ 22779597 (+) False LOC122342317
TU45355 other downstream 873673 23129106 ~ 23130189 (+) True G30636
TU45351 other downstream 902126 23157559 ~ 23159756 (+) True G30632

Expression Profile