RNA id: TU44793


Basic Information

Item Value
RNA id TU44793
length 724
lncRNA type sense_over
GC content 0.41
exon number 2
gene id G30240
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 20327906 ~ 20446324 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGCTTTGGTGGACATGTGGCCTATATGAGGATTTCTGACACATTTATTCTGTCTCAGTGACAGAAGATGAGTATTAGACAGAAgtattaattagtattattatcatGAAGTCTCATAACATCTCACTGTGACTGTCTCAAAGCATTATGAGTAAAATCTCTTTGTGGTCtattctgattcatcaacacagaTCCAGTGATCCGAAATAAGACACAGTAAACCCAGGATAGAgggtctgagtgaatgtggtctggactgtgtggataTGTGTGATTGTGTCAGAGatgctgtagaaggacagagttcctgcgctcttatccacatacactcctgtTCTATGGAACTTCAACACTTCTGTTTTTCTGATGAtgatgggcttcacagagaGATGAGTCTCTTTGttattgtgtctgaatgagtaATATACAGAATTGCAgaacaaactccaggactgatcggTACCTCCAAACCAACACTCATAACTTCGTCCCTTCTTTCTGATGCTTTTATATGACACTGCTATATACACTTCTCCACTCCACTCaatctcccagtaacagcgtccataCACTCTTTCTCGACAAAACACCTGAGGATTATCAAATCTGTCTGCATGATCCGGATATAGCTGATTACAATGAGGCACCCACATCACCTTTCTGTTGTCCTCAGACAGAAGGAGATGATTGCTTGCTGTGTTTGCATCCAGTGTGAGAAAACAGG

Function

GO:

id name namespace
GO:0003779 actin binding molecular_function

KEGG:

id description
ko04612 Antigen processing and presentation
ko05340 Primary immunodeficiency

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250688.1 lncRNA downstream 16716 20303207 ~ 20311190 (-) False LOC122343168
TU44345 lncRNA downstream 16724 20303113 ~ 20311182 (-) True LOC122343168
TU44344 lncRNA downstream 16724 20309919 ~ 20311182 (-) False LOC122343168
TU44337 lncRNA downstream 55617 20271106 ~ 20272289 (-) True G29905
TU44331 lncRNA downstream 174461 20152894 ~ 20153445 (-) True G29900
TU44819 lncRNA upstream 22182 20468506 ~ 20468796 (-) True G30254
TU44823 lncRNA upstream 68493 20514817 ~ 20515117 (-) True G30258
TU44827 lncRNA upstream 146995 20593319 ~ 20598701 (-) True G30262
TU44835 lncRNA upstream 185911 20632235 ~ 20632507 (-) True G30270
TU44837 lncRNA upstream 198640 20644964 ~ 20645535 (-) True G30272
XM_043237276.1 mRNA downstream 58000 20266961 ~ 20269906 (-) True LOC122343007
XM_043237375.1 mRNA downstream 61057 20263660 ~ 20266849 (-) False LOC122343064
XM_043237374.1 mRNA downstream 61057 20263660 ~ 20266849 (-) True LOC122343064
XM_043236066.1 mRNA downstream 76021 20241615 ~ 20251885 (-) True LOC122342268
XM_043237465.1 mRNA downstream 161492 20164709 ~ 20166414 (-) True LOC122343114
XM_043237178.1 mRNA upstream 122055 20568379 ~ 20578860 (-) False LOC122342952
XM_043237175.1 mRNA upstream 122057 20568381 ~ 21492901 (-) True LOC122342952
XM_043237176.1 mRNA upstream 122057 20568381 ~ 20580508 (-) False LOC122342952
XM_043237177.1 mRNA upstream 122057 20568381 ~ 20580480 (-) False LOC122342952
XM_043237210.1 mRNA upstream 144791 20591115 ~ 20615223 (-) True LOC122342969
TU44338 other downstream 45506 20281106 ~ 20282400 (-) True G29906
TU44333 other downstream 89352 20237137 ~ 20238554 (-) True G29902
unassigned_transcript_385 other downstream 111667 20216160 ~ 20216239 (-) True trnal-aag_28
unassigned_transcript_384 other downstream 113574 20214249 ~ 20214332 (-) True trnal-aag_27
unassigned_transcript_383 other downstream 114584 20213241 ~ 20213322 (-) True trnal-cag_25
TU44972 other upstream 881392 21327716 ~ 21330093 (-) True LOC122343135
TU45006 other upstream 937145 21383469 ~ 21386437 (-) True G30395
TU45009 other upstream 937145 21383469 ~ 21385978 (-) False G30395
TU45011 other upstream 1183293 21629617 ~ 21776806 (-) True G30396
TU44977 other upstream 1290767 21737091 ~ 21740330 (-) True G30372

Expression Profile