RNA id: TU44823


Basic Information

Item Value
RNA id TU44823
length 301
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G30258
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 20514817 ~ 20515117 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCACTGAGAGACCCAGAAGAAACCGCAGGAAAAGATCCAGGTGTCCATTCTTACTCTGTAGAGCCTCGTTCACAGCTCTCTGATGCAGCTCAGATAAAGGTCCAATTTCATTAAAgaagacagaaaagaaagatttttgttGGATTTGGTCAAACACATTTATCTTCTTTATTGTTAAGGAGAGGTGCGCATATAGAGCTGCTAGATGTTCCTGAAGACTCAGATGAACAAAGCTGAAGACTTTCCCCTGAAAGAAGCCCAgctcctctctgaagatctgagtgcacaGTCCTGAATAAAC

Function

GO:

id name namespace
GO:0005215 transporter activity molecular_function
GO:0008289 lipid binding molecular_function
GO:0015114 phosphate ion transmembrane transporter activity molecular_function

KEGG:

id description
ko00052 Galactose metabolism
ko03320 PPAR signaling pathway
ko04973 Carbohydrate digestion and absorption
ko04975 Fat digestion and absorption
ko04979 Cholesterol metabolism
ko04977 Vitamin digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44819 lncRNA downstream 46021 20468506 ~ 20468796 (-) True G30254
TU44793 lncRNA downstream 68493 20327906 ~ 20446324 (-) True G30240
TU44789 lncRNA downstream 73976 20321574 ~ 20440841 (-) True G30238
TU44814 lncRNA downstream 84132 20428641 ~ 20430685 (-) False LOC122343165
XR_006250683.1 lncRNA downstream 84139 20428611 ~ 20430678 (-) True LOC122343165
TU44827 lncRNA upstream 78202 20593319 ~ 20598701 (-) True G30262
TU44835 lncRNA upstream 117118 20632235 ~ 20632507 (-) True G30270
TU44837 lncRNA upstream 129847 20644964 ~ 20645535 (-) True G30272
TU44838 lncRNA upstream 134989 20650106 ~ 20650832 (-) True G30273
TU44858 lncRNA upstream 161143 20676260 ~ 20677864 (-) True G30286
XM_043237449.1 mRNA downstream 181536 20330447 ~ 20333281 (-) True LOC122343112
XM_043237276.1 mRNA downstream 244911 20266961 ~ 20269906 (-) True LOC122343007
XM_043237375.1 mRNA downstream 247968 20263660 ~ 20266849 (-) False LOC122343064
XM_043237374.1 mRNA downstream 247968 20263660 ~ 20266849 (-) True LOC122343064
XM_043236066.1 mRNA downstream 262932 20241615 ~ 20251885 (-) True LOC122342268
XM_043237178.1 mRNA upstream 53262 20568379 ~ 20578860 (-) False LOC122342952
XM_043237175.1 mRNA upstream 53264 20568381 ~ 21492901 (-) True LOC122342952
XM_043237176.1 mRNA upstream 53264 20568381 ~ 20580508 (-) False LOC122342952
XM_043237177.1 mRNA upstream 53264 20568381 ~ 20580480 (-) False LOC122342952
XM_043237210.1 mRNA upstream 75998 20591115 ~ 20615223 (-) True LOC122342969
TU44338 other downstream 232417 20281106 ~ 20282400 (-) True G29906
TU44333 other downstream 276263 20237137 ~ 20238554 (-) True G29902
unassigned_transcript_385 other downstream 298578 20216160 ~ 20216239 (-) True trnal-aag_28
unassigned_transcript_384 other downstream 300485 20214249 ~ 20214332 (-) True trnal-aag_27
unassigned_transcript_383 other downstream 301495 20213241 ~ 20213322 (-) True trnal-cag_25
TU44972 other upstream 812599 21327716 ~ 21330093 (-) True LOC122343135
TU45006 other upstream 868352 21383469 ~ 21386437 (-) True G30395
TU45009 other upstream 868352 21383469 ~ 21385978 (-) False G30395
TU45011 other upstream 1114500 21629617 ~ 21776806 (-) True G30396
TU44977 other upstream 1221974 21737091 ~ 21740330 (-) True G30372

Expression Profile