RNA id: TU44835


Basic Information

Item Value
RNA id TU44835
length 273
lncRNA type intronic
GC content 0.29
exon number 1
gene id G30270
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 20632235 ~ 20632507 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTACtgtgaacaaaaacatataGAATTCAATTAAACTACTTTagatttaaagagaaataactgtttaaatttCAATTTGCAAAGTATTCACGCAATCGAGATGATCTCAAGTTTGGTACAAATTGACCCCAAAAAGGCAATTATGacaaatgacagaaaaacacaacaaactaaCACTAGAAATAAATTCTACACAGTAGCTGTCTTTGACTCTGTATCAACTACATTTGAGTTaatggagtaaaaaaaacacttataatcAAACATACACT

Function

GO:

id name namespace
GO:0006950 response to stress biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44827 lncRNA downstream 33534 20593319 ~ 20598701 (-) True G30262
TU44823 lncRNA downstream 117118 20514817 ~ 20515117 (-) True G30258
TU44819 lncRNA downstream 163439 20468506 ~ 20468796 (-) True G30254
TU44793 lncRNA downstream 185911 20327906 ~ 20446324 (-) True G30240
TU44837 lncRNA upstream 12457 20644964 ~ 20645535 (-) True G30272
TU44838 lncRNA upstream 17599 20650106 ~ 20650832 (-) True G30273
TU44858 lncRNA upstream 43753 20676260 ~ 20677864 (-) True G30286
TU44867 lncRNA upstream 103639 20736146 ~ 20737160 (-) True G30293
TU44880 lncRNA upstream 226477 20858984 ~ 20861471 (-) False LOC122343123
XM_043237210.1 mRNA downstream 17012 20591115 ~ 20615223 (-) True LOC122342969
XM_043237176.1 mRNA downstream 51727 20568381 ~ 20580508 (-) False LOC122342952
XM_043237177.1 mRNA downstream 51755 20568381 ~ 20580480 (-) False LOC122342952
XM_043237178.1 mRNA downstream 53375 20568379 ~ 20578860 (-) False LOC122342952
XM_043237449.1 mRNA downstream 298954 20330447 ~ 20333281 (-) True LOC122343112
XM_043237181.1 mRNA upstream 47583 20680090 ~ 20690873 (-) True LOC122342955
XM_043237187.1 mRNA upstream 60455 20692962 ~ 20716250 (-) False LOC122342956
XM_043237185.1 mRNA upstream 60456 20692963 ~ 20716250 (-) False LOC122342956
XM_043237188.1 mRNA upstream 60456 20692963 ~ 20716232 (-) False LOC122342956
XM_043237189.1 mRNA upstream 60456 20692963 ~ 20716190 (-) False LOC122342956
TU44338 other downstream 349835 20281106 ~ 20282400 (-) True G29906
TU44333 other downstream 393681 20237137 ~ 20238554 (-) True G29902
unassigned_transcript_385 other downstream 415996 20216160 ~ 20216239 (-) True trnal-aag_28
unassigned_transcript_384 other downstream 417903 20214249 ~ 20214332 (-) True trnal-aag_27
unassigned_transcript_383 other downstream 418913 20213241 ~ 20213322 (-) True trnal-cag_25
TU44972 other upstream 695209 21327716 ~ 21330093 (-) True LOC122343135
TU45006 other upstream 750962 21383469 ~ 21386437 (-) True G30395
TU45009 other upstream 750962 21383469 ~ 21385978 (-) False G30395
TU45011 other upstream 997110 21629617 ~ 21776806 (-) True G30396
TU44977 other upstream 1104584 21737091 ~ 21740330 (-) True G30372

Expression Profile