RNA id: TU44875


Basic Information

Item Value
RNA id TU44875
length 2160
lncRNA type intronic
GC content 0.44
exon number 2
gene id G30301
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 21065914 ~ 21068188 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGAACTAGTGATTTATTGTAAGcgtgcataatatatatgtcaCTATTGTGGTTTTCGTGGGAAAGGAGCACTTGAGAAGTAAATAAACTtgaacagatttaatccaaTGACgagcaaaataatatatacaggcAGACAGGACATAAACCACATGTAGGtaacctcgacgatcggacaacgtgaactcaaaacacacaggactaaatacacaaggaaattgactaaattaacagggagtagctgaagacaattatacaataaacaCTGCACTGGACGGAGCGCTCGAGGGGCACTGGACGCAGCGCACGTGGCGCAGACACTGGACGGAACTCTTGGGGAACAGTCTCTTGAGGCAGGTAttcaggacggctgggcggtcTCCACCATGGCtagctctgttgccggctcacgcacctggtctgtcgtaGTCGGCTCAGGTCTGGTGGCGCTCCatggctctgtcgctctcctctGCAATGGTTCCATGGTCGTGCCAGACTCTGCGACTGCGCCATCGGTGGGCACAGGCTTGGGCTCCGCAATGCGGGGAGATaatgggctgggctctggatcctgagtggggctggtgtcgttgtccatGGGCTGAACAATCATCGGCAagttgcacgacaccagcacccactcgatgtatgCGGCGACGCTCTCGAGGGCTGGCCGTCCCCAGACAGCTTCGCTTGTGTGGAGGTGTTTAGTCCGCAGAAATGGAtcgagcagaggaagctgtccgggtagcgcGAGTCGTTTGCaagggcgaggaagtccttcGTATAGCCTTTTGAGAGAGCTATCCTCCTGCTGCAGCAGGAGAATGAGGAAGTTCGGGTCGTCATAAGGGGAatcatgacaaaacaaaaaacaataggGGAAATACGCCGATCGTACTGTCACGCTTGTGGTTTAGCGAGAAGGAGCACAAGGCAAGTaacataaacttaaacagatttaatctttttaatggGCAAAATACAtataggcaggcaggcaggacaaaaaccacgtaAGGACATTGACGATCGAACcctatgaactcaaaacacacaggactaaatacacaaggaaattgaattaacagggagcaggtgaagacaattatacaataaacacgaagggaaggtagggcacagagagcacatggcacgagacaataaacaaagagtccagagatgtgacaatatatatatatatatataacaacacaAACAATGACCTGGGGATATGTATGATAAGAAAGTAATGGACAAATTTGTCTATGAATTCATTCCTATAGCATTATGTGTCTGTCTTAAAGAGAATTAAGTAAGGAGGAAGACTCTTTCTACATACTTCCAGGTCATAAACTTTATCTGATCTGGCTCTTATCTTACCATGGTAACCAGGTGTCTAGAGATCATTTACAGATTTATAAGCACCAAGGCTGGAGTTGGGTGAGGAATCTGTGCTAATAAATTaatcttaataaataatatatttgttaaaagtaataaaacgtTTTGTGTCTGTTTAGTATAAACGCCACATTTTTATAACAGGAGAAAAAATAAGAACAGTTAAATATGCGTAATTAACAATTTCAAAACAAAGGTAAGCTATCTCTGTTGTTGCTTACTGGCCTACTTTTCAATCTGACACAGAGATACTGAATCAAAAACTGTAAATCCAGCATGAAGTGACTCAGTGAATGCGTTGAcgaatgtgtgtaagtgtgtaagtgtgtgtgtgtcagagacgctgtagaaggacagagtgcCAGCCGATACATCgacatacactcctactctcTTAGAGGAGTGTGGAGGGACACGTAGGTCAATTGAATTAAGATTGTGCCagacagtaaatatattattaaaacatatcagACTCCAAGAGTTTTTATTGTACCCAAACTCACAGGTACAACTTCTTCCTTTCCTTCTGATTCCTTTGTTTGTCACTGATATAATAGCAGTTCCACTCCATTCagcctcccagtaacagcgtcctaACAGGCTCTCTCTGCACAGAACCTGAGGACAcccatcaaatctgtctggatgatcaggatattGCTGACAGTCTTCCACATGTGTCACCTTTTTGCTGTTTTCAGACAGAATGAGACGATTGTGTACTGTGTTTCGATCCAGTGTGAGATCGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44912 lncRNA downstream 12260 21052978 ~ 21053654 (-) False LOC122343098
TU44899 lncRNA downstream 91849 20972276 ~ 20974065 (-) True G30317
TU44880 lncRNA downstream 204443 20858984 ~ 20861471 (-) False LOC122343123
TU44867 lncRNA downstream 328754 20736146 ~ 20737160 (-) True G30293
TU44858 lncRNA downstream 388050 20676260 ~ 20677864 (-) True G30286
TU44930 lncRNA upstream 49627 21117815 ~ 21126071 (-) True G30343
TU44981 lncRNA upstream 208034 21276222 ~ 21279043 (-) True LOC122343113
TU45004 lncRNA upstream 310394 21378582 ~ 21765825 (-) True G30394
TU45015 lncRNA upstream 327184 21395372 ~ 21783591 (-) False LOC122343153
TU45027 lncRNA upstream 424076 21492264 ~ 21492907 (-) True G30406
XM_043237423.1 mRNA downstream 12189 21048857 ~ 21053725 (-) True LOC122343098
XM_043237209.1 mRNA downstream 27515 21030443 ~ 21038399 (-) True LOC122342968
XM_043237199.1 mRNA downstream 103391 20949743 ~ 20962523 (-) True LOC122342960
XM_043237179.1 mRNA downstream 150074 20907255 ~ 20915840 (-) True LOC122342953
XM_043237499.1 mRNA downstream 174239 20888926 ~ 20891675 (-) True LOC122343141
XM_043236080.1 mRNA upstream 3184 21071372 ~ 21081090 (-) True LOC122342284
XM_043237196.1 mRNA upstream 163572 21231760 ~ 21247753 (-) False LOC122342959
XM_043237197.1 mRNA upstream 163572 21231760 ~ 21247753 (-) False LOC122342959
XM_043237198.1 mRNA upstream 163572 21231760 ~ 21245263 (-) True LOC122342959
XM_043236085.1 mRNA upstream 182211 21250399 ~ 21276097 (-) True LOC122342288
TU44338 other downstream 783514 20281106 ~ 20282400 (-) True G29906
TU44333 other downstream 827360 20237137 ~ 20238554 (-) True G29902
unassigned_transcript_385 other downstream 849675 20216160 ~ 20216239 (-) True trnal-aag_28
unassigned_transcript_384 other downstream 851582 20214249 ~ 20214332 (-) True trnal-aag_27
unassigned_transcript_383 other downstream 852592 20213241 ~ 20213322 (-) True trnal-cag_25
TU44972 other upstream 259528 21327716 ~ 21330093 (-) True LOC122343135
TU45006 other upstream 315281 21383469 ~ 21386437 (-) True G30395
TU45009 other upstream 315281 21383469 ~ 21385978 (-) False G30395
TU45011 other upstream 561429 21629617 ~ 21776806 (-) True G30396
TU44977 other upstream 668903 21737091 ~ 21740330 (-) True G30372

Expression Profile