RNA id: TU44899


Basic Information

Item Value
RNA id TU44899
length 1205
lncRNA type intronic
GC content 0.39
exon number 2
gene id G30317
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 20972276 ~ 20974065 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTCCATGAATTCCATGTTCCCTTTTGAAGATCTCAGCAATCATTCCTGTGAACTCAATGTCTTTACTCGCATCAATACCATTCTTTTAGATCATCCTTatagaacacaatgttttccttttttagctGTTCAAATGCTAACTTGgctaatttcaaaataatttcccTGTTTGCTTCTAAGTGTTCTATGAATTCTCTTTCTTCTTGTTCTTCATATTTCTGGTTCTTCATGTCCATCTGTATAAGcaggaagtgaatgtacatttcagtgagtGTTGTGCTGATCTTCACTTCACTGTTCTCAGTGAGAATATCCTGAAGTACTGTGGctgtgatccagcagaacacaggaatgtggcacatgatgtagagactacgagacgtcttaatgtgtgagatgattctggaggACAGACTCTCATCTTTGATTCTCTTTCTGAAGTACTTCTCCTTCTGTTGGTCAGTGAATCCTCGCACCTCTGTAAACAAACCCACATACCGAGgaggaatctgattggctgctgctgagTCGTGATGTGACCCAGACAAGAGCTGATGGAAGCAGAGTTCCTTTGACCAGACTTGTAAAGAGCACATCTACAGATGCTTTTTTCTCAGTAGTTTTCATTGATTTCCATCTAAAATTTAGAGGCAGCCGACTctcatcaagtccatcaaatataaatgctagCTTACATCCCTTATATAGCTTTGATTTCTCCAGGTTCTCCAGGTCAGGATAAAATTCCAGCAGAAACTCATGGAGACTGAAATCTTCAtttgtcattaaattaatttctctgaatggaagcagaaacacacagtgaATATCCTGGTTAGATTCTCCTTCtgcccagtccaggatgaacttgtgcacagagacagtttttcctATGCCAGCGACTCCTTTGGTCAGCACAGTATTTTTCTGACTGTTTTTCCTCagttcagtaaatatatcattgcatttgatcggtttgtcctgtgtttttttaatcttaaaagcATCATCAATCTTCAGAATCTCATGTTCGTGATTGACCTCTTTCATATCTCCCTCTGTAATGAACAGATCTGTGTAAACAGCCTTGAGttgtgcttcattttctttgtttccttcaaaaatacatttagctttattcttcatgtttgttttgtgagattcaaaaagttttgcagctcCCGGATATGTAGTGAATCACCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44880 lncRNA downstream 110805 20858984 ~ 20861471 (-) False LOC122343123
TU44867 lncRNA downstream 235116 20736146 ~ 20737160 (-) True G30293
TU44858 lncRNA downstream 294412 20676260 ~ 20677864 (-) True G30286
TU44838 lncRNA downstream 321444 20650106 ~ 20650832 (-) True G30273
TU44837 lncRNA downstream 326741 20644964 ~ 20645535 (-) True G30272
TU44912 lncRNA upstream 78913 21052978 ~ 21053654 (-) False LOC122343098
TU44875 lncRNA upstream 91849 21065914 ~ 21068188 (-) True G30301
TU44930 lncRNA upstream 143750 21117815 ~ 21126071 (-) True G30343
TU44981 lncRNA upstream 302157 21276222 ~ 21279043 (-) True LOC122343113
TU45004 lncRNA upstream 404517 21378582 ~ 21765825 (-) True G30394
XM_043237199.1 mRNA downstream 9753 20949743 ~ 20962523 (-) True LOC122342960
XM_043237179.1 mRNA downstream 56436 20907255 ~ 20915840 (-) True LOC122342953
XM_043237499.1 mRNA downstream 80601 20888926 ~ 20891675 (-) True LOC122343141
XM_043237263.1 mRNA downstream 100582 20865561 ~ 20871694 (-) True LOC122342999
XM_043237476.1 mRNA downstream 107870 20858423 ~ 20864406 (-) True LOC122343123
XM_043237209.1 mRNA upstream 56378 21030443 ~ 21038399 (-) True LOC122342968
XM_043237423.1 mRNA upstream 74792 21048857 ~ 21053725 (-) True LOC122343098
XM_043236080.1 mRNA upstream 97307 21071372 ~ 21081090 (-) True LOC122342284
XM_043237196.1 mRNA upstream 257695 21231760 ~ 21247753 (-) False LOC122342959
XM_043237197.1 mRNA upstream 257695 21231760 ~ 21247753 (-) False LOC122342959
TU44338 other downstream 689876 20281106 ~ 20282400 (-) True G29906
TU44333 other downstream 733722 20237137 ~ 20238554 (-) True G29902
unassigned_transcript_385 other downstream 756037 20216160 ~ 20216239 (-) True trnal-aag_28
unassigned_transcript_384 other downstream 757944 20214249 ~ 20214332 (-) True trnal-aag_27
unassigned_transcript_383 other downstream 758954 20213241 ~ 20213322 (-) True trnal-cag_25
TU44972 other upstream 353651 21327716 ~ 21330093 (-) True LOC122343135
TU45006 other upstream 409404 21383469 ~ 21386437 (-) True G30395
TU45009 other upstream 409404 21383469 ~ 21385978 (-) False G30395
TU45011 other upstream 655552 21629617 ~ 21776806 (-) True G30396
TU44977 other upstream 763026 21737091 ~ 21740330 (-) True G30372

Expression Profile