RNA id: XM_043237423.1


Basic Information

Item Value
RNA id XM_043237423.1
length 1655
RNA type mRNA
GC content 0.38
exon number 2
gene id LOC122343098
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 21048857 ~ 21053725 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGTATAACATTTTCTAATGTAAAATGATCTCGATGAAATCGaacaagacttttattttggtctgGTGATGTGACGTCATAAGGCTGCGCCGCGCTCCTACATCTGTGATTTAACCGAAGAAATGTGCTggcttttaatcattttaagtgtttaaaactcGTTAGAGAATTACACGGAAGATACATTGTTAGCCGATGTAACACTGTGATGCGTTATTTAGTGACATTGCGGTCCCTGTTTAGTAAATAATTTAGCTTAAACGAATTCTTCCACTGGTAAGTGTTGATAGAAACTGAATCAATTGATTCACGAGACGATTCACTGATTTGAATCGATCGAATCGCCGCGCGTCGATGACTCTTGCTGCTCAAAACAACGAACACGTGATAATGAAAACTTTTACACACAAACTGcagctgtttttattaaagtgtgatctgttaaataatttacaagTCAGTAAATActaaatagaaatacaaatgTGAAAGTTGTGAATGATATGTGTCTTATGTGCTAgttttggttgtttgttttcatcaggTAATTCTTGAGGTAAATCTGAACTACAGATTTGGTTTGGattcataatttctttcttctgttatttattcttttcttaAACAGTCCaaaatcacagaaaaacacCCGGAGAAACAGCCGAGATCCACGTGGCACTAATATAAAGATGGCATttgttaaagaggagagtgaagacgTGAAGATTGAAGAAACATTCAGAGTCAAACATGAAGAtactgaggaacaaacagACCTGACAacactgaaagaagaaagccatctTCTCAATGAAGAAAACGACGACTCTCATtctgaaaagattaaaaaaagagatcaaaAGACAGCAAATAGAATATATTtgacctgccaacagtgtggaaagatcttcaaaaaaaaatctgacctCAAGGTCCACTtgagagttcacactggagagaagcctttcaccTGCCAACATTGTGGTAAGAGTTTCAACAGAAAAGGAAACATTGAAGTTCACCTAAGAGGtcacactggagaaaaaccttttacctgccaacagtgtggaaagggTTTTATTCGAAAAGCAGACCTTACATATCACACgagagttcacactggagagaaacccttcacctgccaacagtgtggaaagagttttactaAACAAGGAAACCTTAAAGAGCACATAAGAATTCAttctggagagaagccttacaccTGTAAGCTGTGTGGAAAGAACTTCATTCGAAAACCACACCTTACAAaccacatgagaattcacagtGAAGAGAAGCCTTACATGTGCCCTCaatgtggaaaaagttttacacaaaaacaacacctcATTGTCCACATaaggattcacaccggagagaaacctttcagctgccaacagtgtggaaagagtttcactgAAAAAGGAACCCTTAGAAAACATATAAAGATTCACACGCGAGAGAAGGCGTTTACAGGTGATCAGAGTTTCAGACGTGAAGTAGGTCTTTAACATGTTGTGATTTACTGTTCAGTGTGCTACTTGATCAACTGCCAAGTTAAaataaccctaacccctaacccggATATGCTCATATGTATTTGTCATTTGTgtgctttaataaaatcaaaggtCTAAAAATCCTTAAAGTGTTTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44899 lncRNA downstream 74792 20972276 ~ 20974065 (-) True G30317
TU44880 lncRNA downstream 187386 20858984 ~ 20861471 (-) False LOC122343123
TU44867 lncRNA downstream 311697 20736146 ~ 20737160 (-) True G30293
TU44858 lncRNA downstream 370993 20676260 ~ 20677864 (-) True G30286
TU44838 lncRNA downstream 398025 20650106 ~ 20650832 (-) True G30273
TU44875 lncRNA upstream 12189 21065914 ~ 21068188 (-) True G30301
TU44930 lncRNA upstream 64090 21117815 ~ 21126071 (-) True G30343
TU44981 lncRNA upstream 222497 21276222 ~ 21279043 (-) True LOC122343113
TU45004 lncRNA upstream 324857 21378582 ~ 21765825 (-) True G30394
TU45015 lncRNA upstream 341647 21395372 ~ 21783591 (-) False LOC122343153
XM_043237209.1 mRNA downstream 10458 21030443 ~ 21038399 (-) True LOC122342968
XM_043237199.1 mRNA downstream 86334 20949743 ~ 20962523 (-) True LOC122342960
XM_043237179.1 mRNA downstream 133017 20907255 ~ 20915840 (-) True LOC122342953
XM_043237499.1 mRNA downstream 157182 20888926 ~ 20891675 (-) True LOC122343141
XM_043237263.1 mRNA downstream 177163 20865561 ~ 20871694 (-) True LOC122342999
XM_043236080.1 mRNA upstream 17647 21071372 ~ 21081090 (-) True LOC122342284
XM_043237196.1 mRNA upstream 178035 21231760 ~ 21247753 (-) False LOC122342959
XM_043237197.1 mRNA upstream 178035 21231760 ~ 21247753 (-) False LOC122342959
XM_043237198.1 mRNA upstream 178035 21231760 ~ 21245263 (-) True LOC122342959
XM_043236085.1 mRNA upstream 196674 21250399 ~ 21276097 (-) True LOC122342288
TU44338 other downstream 766457 20281106 ~ 20282400 (-) True G29906
TU44333 other downstream 810303 20237137 ~ 20238554 (-) True G29902
unassigned_transcript_385 other downstream 832618 20216160 ~ 20216239 (-) True trnal-aag_28
unassigned_transcript_384 other downstream 834525 20214249 ~ 20214332 (-) True trnal-aag_27
unassigned_transcript_383 other downstream 835535 20213241 ~ 20213322 (-) True trnal-cag_25
TU44972 other upstream 273991 21327716 ~ 21330093 (-) True LOC122343135
TU45006 other upstream 329744 21383469 ~ 21386437 (-) True G30395
TU45009 other upstream 329744 21383469 ~ 21385978 (-) False G30395
TU45011 other upstream 575892 21629617 ~ 21776806 (-) True G30396
TU44977 other upstream 683366 21737091 ~ 21740330 (-) True G30372

Expression Profile