RNA id: XM_043237491.1



Basic Information


Item Value
RNA id XM_043237491.1
length 861
RNA type mRNA
GC content 0.39
exon number 3
gene id LOC122343135
representative False

Chromosome Information


Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 21327615 ~ 21336881 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


tgaaaaactggaaGATCCAaactgctctctgaaaaacctCAAAGTTGATCATGGAGGAGAAtccaggattacagcaggactCAAGAAATatgagtgttttttcacactggatccaaacacagcaaaccCTCGTCTCATTCTGTCTGAGAAGAACAGAAAGGTGATGTGGGTGTATCAGCGTCAGTTGTATCCTGGACACCCAGACAGATTTGAAGCGtatcaggtgttgtgtagagagagtgtgtgtggacgctgttactgggagactgagtggagCAGAGATGTGtctatatcagtgtcatataagaacatcagcaggaagggactgggtaaagagtgtgtgtttggacgcaatgatcagtcctggagtttgatctGTTCTCCTGACAGAtactcattcagacacaataaCATACAAACTGATTtctctgtgaagcccatcaTCAGCAGAAAAAGAAGAACAGGAGAGTATGAAGATATctacagagtaggagtgtatgtggatgagagcgcaggaactctgtccttcttcagcgtctctgactcaatgagactcatccacacagtccagaccacattcactcagacactctgtcCTGGGTTTAGAGTTTATTCtggatcatcagtgaaactgtgttgatgaatcagaagagactgatgagattctacccagaatgctttcaaaatataaataataacagaaatatgtgtgttttatttttgttaatcaattaaacatatttgtttaaatgtaaaaatgtcacaaaaatgatTGATGAAGAACATGTCATTAAtttatctgttgtttttgtacagaaataataaaacactgataaatCAACTTGATCAGATTTTAATTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU44981 lncRNA downstream 48572 21276222 ~ 21279043 (-) True LOC122343113
TU44930 lncRNA downstream 201544 21117815 ~ 21126071 (-) True G30343
TU44875 lncRNA downstream 259427 21065914 ~ 21068188 (-) True G30301
TU44912 lncRNA downstream 273961 21052978 ~ 21053654 (-) False LOC122343098
TU44899 lncRNA downstream 353550 20972276 ~ 20974065 (-) True G30317
TU45004 lncRNA upstream 41701 21378582 ~ 21765825 (-) True G30394
TU45015 lncRNA upstream 58491 21395372 ~ 21783591 (-) False LOC122343153
TU45027 lncRNA upstream 155383 21492264 ~ 21492907 (-) True G30406
TU45029 lncRNA upstream 162757 21499638 ~ 21499998 (-) True G30408
XR_006250701.1 lncRNA upstream 331929 21668810 ~ 21673424 (-) False LOC122343179
XM_043237421.1 mRNA downstream 5520 21318814 ~ 21322095 (-) False LOC122343094
XM_043237420.1 mRNA downstream 5537 21318814 ~ 21322078 (-) True LOC122343094
XM_043236087.1 mRNA downstream 13645 21309532 ~ 21313970 (-) True LOC122342290
XM_043237236.1 mRNA downstream 39293 21282287 ~ 21288322 (-) True LOC122342980
XM_043237462.1 mRNA downstream 48572 21276223 ~ 21279043 (-) False LOC122343113
XM_043236089.1 mRNA upstream 44911 21381792 ~ 21383191 (-) True LOC122342292
XM_043237508.1 mRNA upstream 50972 21387853 ~ 21396905 (-) True LOC122343153
XM_043237304.1 mRNA upstream 147900 21484781 ~ 21487205 (-) True LOC122343027
XM_043236092.1 mRNA upstream 150324 21487205 ~ 21495229 (-) True LOC122342296
XM_043237212.1 mRNA upstream 180592 21517473 ~ 21528946 (-) True LOC122342973
TU44338 other downstream 1045215 20281106 ~ 20282400 (-) True G29906
TU44333 other downstream 1089061 20237137 ~ 20238554 (-) True G29902
unassigned_transcript_385 other downstream 1111376 20216160 ~ 20216239 (-) True trnal-aag_28
unassigned_transcript_384 other downstream 1113283 20214249 ~ 20214332 (-) True trnal-aag_27
unassigned_transcript_383 other downstream 1114293 20213241 ~ 20213322 (-) True trnal-cag_25
TU45006 other upstream 46588 21383469 ~ 21386437 (-) True G30395
TU45009 other upstream 46588 21383469 ~ 21385978 (-) False G30395
TU45011 other upstream 292736 21629617 ~ 21776806 (-) True G30396
TU44977 other upstream 400210 21737091 ~ 21740330 (-) True G30372
TU45110 other upstream 791573 22128454 ~ 22245160 (-) True G30450

Expression Profile