RNA id: TU44981


Basic Information

Item Value
RNA id TU44981
length 2539
lncRNA type read_through
GC content 0.39
exon number 3
gene id LOC122343113
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 21276222 ~ 21279043 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TATGTAGTCATTGCATTTGTCCTGGGAACGTGATGGTATCGGACACAGCGGTAATGATTTTTTCCATCTAAACAGAAACAGTCTCGCAATAATAAACACCTGCTCAGTGGAATGATTTAGAAACCATCAAAAGAGAGACCTGCTGTGTAACATTCTTCAGCATATGGACAACCTTATACCTTGTCACAGTTCTCAACATAGCGCAGTATCCCTGAGAAGATCTTCACGTGGCAGGCTATTTTATCTACCGCACAAGCCAAGGCTTGTTTGTCACTTTTTGCACTtgaactgcaaaaacaaatgatttgatCTCGACCATTCATTCAGGAGACATCAGAAGCACCAGACAAACAAGATTAAAACAGGTAAGCATAAAAAATTCTCAAAATTATTTGATAGCATTCAGCTTAATTTCATTGTACTGTGTTGATCTAAATTAAAGCTTACCCGATTCAACatgttcctaggtcaacatcTTTGTGATTAACAACAACGTTGTGATTGACCAACAACCAGtgtatagtttttgtgaagtttatactcaaaatcagtgtttggtgcttgcaCATCAATGTCTTTCATCTGTCATTAAATGAGATTATAGGCATTATTCATGGATATGCTGAGCTAGACACAcgtcaaactcagcaaaatcaggttgtGCAAACAGAACACAtccttgttttatatatattcttaacaaaatgtttttttgtattgatgTTGTTGGATATTTAGtttcaatataaaaatttaaGAACTTGCAAACTGTTTTTCTCTATTTAACAGCATTGATTTATGATATTGAACGGCGACTTCTGCTTTTGATGATGAATTCCCTCAGGTAGGTGGCACATTCTTTTGGTTTGGCTGGATGTTGGAAACTTGACCGATAATCATGTTGTTTCCATCTCTCCAAATCGATAGGCTGGTAAACGGGACATAGAATGTTCCATTAAACTGTGACCACTCTCACTCCATGTTATTTCATAGGTATGAATGGATTTAGATAGATTTTTGTGTCCTTTCAAGGTTTGGCCACTGCTGTTGCATCCAGAGATCTAAAGGAATGTTTATAGCTGTCATTTCCTAAACCTTAGGTTTTGGTCCGAAGGTGAGGGTCAACCCGTTGTCCAATGACAAGTCCCCTCTTAGGTGGTCGCGTGTGCAGGAGGTCTATCTTCCTGCCCTGCTAGAGGTGTCTGAAAGTTGTCTTGGCATCTCATCTGATGTTTCTGAACATTTGTTTATGTTCCTCCACCATCATCCAATCAGTGTGGGGCACATCTCCCTCCACAACAGCAATTACAGAGAATCCTTAAAAAAAGACCGCTTAGGCCCTCAAATCGCAGCACAGGAGTTTGTCTGATACTGTGTTTACTGATTGATTgttactctgtgtgtgttttacagtgtgGATCATGGAGAAAAATGCGAGATTacagcaaaaccaaaaaaatGTACGTGTCttttcacactggatccaaacacagcaaacactgaactcattctgtctgaggagaacaaaAATGTGACAGGTGTGAGAAAGAAACAGCCATATCccgatcatccagacagatttgatcaTTGGtatcaggtgttgtgtagagagagtgtgtgtggacgctgttactgggagatcGAGTGGAGTGGAGATGTGCgaatatcagtgtcatataaaaacatcagcaggaagggacCGGGTAAAGAGTGTGAGTTTGGatctaatgatcagtcctggagtttggaCTGCTTTCCCTACAGTTACTCATTCAGACACAACAACATAGTCACTGAGCTTCTTGTAGAGTCCATCAGCAgtagagtaggagtgtatgtggatcacagcgcaggaactctgtccttctacaaCGTAGAAACAATGAAACttatccacacagtccagaccacattcactcagccGCTCTATCCTGGGTTTGGGTTTAATTATTATGGATCGGTGAAACTGAAAAATGACTGACCAGAAATTTTACTTATAATCTTTTGAGATGCAATGTGTGTGATACACGGCAAGATGTGTGTGCTAAAATGACAATATGTATCTGTGTATCTTTTCTCAAcctctgtttgttttcattgtagTGTCACGTCGATCATTTGAGTTATTGCTATCAATATAAATTTTCcactgaaaatgtacattttaattaaagaacTGTAGCATCTGCTTAGGATCACTGTCGATCGCTTAGGCTTGGTGTCTCAGAAACCCTTTTAGCCTTCTGACGTTCAGTGATATACACTACGTGATCAtaaaatgcaaagttatttttactgtaccGTGGGCTAAACTACACCTATTCTTCAGACCAGTCATAAACCATGCAAACGTTTAAACTATGCACCTTGCTATTGGTCAACGTGTTAATAACTGGATGAATCTGTTGAATCAAGATTAGAAGCCATGCCaagcataatataaataaattctacagATAATTCTGTATAAGTGGAAAACCAATAATACATCATTTTCAGCTGTGAATggtatatttacaataaattgtTACAATGTCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44930 lncRNA downstream 150151 21117815 ~ 21126071 (-) True G30343
TU44875 lncRNA downstream 208034 21065914 ~ 21068188 (-) True G30301
TU44912 lncRNA downstream 222568 21052978 ~ 21053654 (-) False LOC122343098
TU44899 lncRNA downstream 302157 20972276 ~ 20974065 (-) True G30317
TU44880 lncRNA downstream 414751 20858984 ~ 20861471 (-) False LOC122343123
TU45004 lncRNA upstream 99539 21378582 ~ 21765825 (-) True G30394
TU45015 lncRNA upstream 116329 21395372 ~ 21783591 (-) False LOC122343153
TU45027 lncRNA upstream 213221 21492264 ~ 21492907 (-) True G30406
TU45029 lncRNA upstream 220595 21499638 ~ 21499998 (-) True G30408
XR_006250701.1 lncRNA upstream 389767 21668810 ~ 21673424 (-) False LOC122343179
XM_043236085.1 mRNA downstream 125 21250399 ~ 21276097 (-) True LOC122342288
XM_043237196.1 mRNA downstream 28469 21231760 ~ 21247753 (-) False LOC122342959
XM_043237197.1 mRNA downstream 28469 21231760 ~ 21247753 (-) False LOC122342959
XM_043237198.1 mRNA downstream 30959 21231760 ~ 21245263 (-) True LOC122342959
XM_043236080.1 mRNA downstream 195132 21071372 ~ 21081090 (-) True LOC122342284
XM_043237236.1 mRNA upstream 3244 21282287 ~ 21288322 (-) True LOC122342980
XM_043236087.1 mRNA upstream 30489 21309532 ~ 21313970 (-) True LOC122342290
XM_043237421.1 mRNA upstream 39771 21318814 ~ 21322095 (-) False LOC122343094
XM_043237420.1 mRNA upstream 39771 21318814 ~ 21322078 (-) True LOC122343094
XM_043237491.1 mRNA upstream 48572 21327615 ~ 21336881 (-) False LOC122343135
TU44338 other downstream 993822 20281106 ~ 20282400 (-) True G29906
TU44333 other downstream 1037668 20237137 ~ 20238554 (-) True G29902
unassigned_transcript_385 other downstream 1059983 20216160 ~ 20216239 (-) True trnal-aag_28
unassigned_transcript_384 other downstream 1061890 20214249 ~ 20214332 (-) True trnal-aag_27
unassigned_transcript_383 other downstream 1062900 20213241 ~ 20213322 (-) True trnal-cag_25
TU44972 other upstream 48673 21327716 ~ 21330093 (-) True LOC122343135
TU45006 other upstream 104426 21383469 ~ 21386437 (-) True G30395
TU45009 other upstream 104426 21383469 ~ 21385978 (-) False G30395
TU45011 other upstream 350574 21629617 ~ 21776806 (-) True G30396
TU44977 other upstream 458048 21737091 ~ 21740330 (-) True G30372

Expression Profile