RNA id: TU45004



Basic Information


Item Value
RNA id TU45004
length 894
lncRNA type read_through
GC content 0.49
exon number 2
gene id G30394
representative True

Chromosome Information


Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 21378582 ~ 21765825 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


TGCGAGCAGACTTTAATATCTTGGTGATATCTTCTCCTACGTACACATTTGTCAGCTTTCTCGAAGAAAAGAACTAAACATGCAAGAACTAgagagaaaaagtaaaaagaaatgttgacTACGTACAAAAGCTAGACTATACCAGATCAAGCTCTacgttttgggtgaactgttgctTTTTGTCTCCTTCAGTTGTTTTCGATCCGAAGCGCTATTCTCTGCGAACGAAAGGCTTCCTTTAACGTGACGTTACGATTTTTCCTGCCCGAGAAACTCCTTCCACGCCAAAGACATGTAAAACCGCGATCTCAAGTGAGTCTTCATGTGGGTATTGAAGCATACTTTGCTTGCGAAGGCCGTTCCGCACTGAGGACAGACGAAGGACCGCTTTTCGGCGTGGATTCTCATCACGTGCTTCTTAAGACTTCCGTTTTCGGTGAAGCCATTGCCGCAGAGCTCGCAGGTGTACGGCTTTTCTCTCGTGTGGCTCCTGCCGTGCTTCTTGAGGTTGGAGTTGCTCAGGAAGCGTTTCCCGCACTCGGGGCAGGCGTAAGGCCTCTCCCCGCTGTGGATCTTCATGTGGGCTACGAGATTTCCTTTCGAGGCGAAACTCTTTCCGCATTGCTGGCAGgcgaaaggcttctctccgctGTGAACTCTCGAGTGCTGAGTCAGGATTCTTTTCTGACCGAAAGTCTTTCCGCACTCTTCGCAGGTATAAGGCTTGTCTCCGTGCTTTTCGAGGCCTTCTTCGCTTTCCATTCCAGTAAGTTCTCGGCTCTCCTCTTTCCGCGGCATCTGGCCTAAAAGCAAACGAGAGACGAATTCAAGTTAACAGACACCAGATACGTACAGCTTCATGCCTCGGGAGAACTGGGAAGATCTCAAATTAGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU44981 lncRNA downstream 99539 21276222 ~ 21279043 (-) True LOC122343113
TU44930 lncRNA downstream 252511 21117815 ~ 21126071 (-) True G30343
TU44875 lncRNA downstream 310394 21065914 ~ 21068188 (-) True G30301
TU44912 lncRNA downstream 324928 21052978 ~ 21053654 (-) False LOC122343098
TU44899 lncRNA downstream 404517 20972276 ~ 20974065 (-) True G30317
TU45070 lncRNA upstream 3754 21769579 ~ 21772200 (-) False LOC122342302
TU45132 lncRNA upstream 514847 22280672 ~ 22281189 (-) True G30465
TU45173 lncRNA upstream 593392 22359217 ~ 22421953 (-) True G30499
XR_006250717.1 lncRNA upstream 630693 22396518 ~ 22398023 (-) True LOC122343195
TU45181 lncRNA upstream 659767 22425592 ~ 22428757 (-) True G30506
XM_043237491.1 mRNA downstream 41701 21327615 ~ 21336881 (-) False LOC122343135
XM_043237421.1 mRNA downstream 56487 21318814 ~ 21322095 (-) False LOC122343094
XM_043237420.1 mRNA downstream 56504 21318814 ~ 21322078 (-) True LOC122343094
XM_043236087.1 mRNA downstream 64612 21309532 ~ 21313970 (-) True LOC122342290
XM_043237236.1 mRNA downstream 90260 21282287 ~ 21288322 (-) True LOC122342980
XM_043236098.1 mRNA upstream 3299 21769124 ~ 21772399 (-) True LOC122342302
XM_043236099.1 mRNA upstream 9273 21775098 ~ 21780619 (-) True LOC122342303
XM_043236101.1 mRNA upstream 81295 21847120 ~ 21860284 (-) True LOC122342306
XM_043237440.1 mRNA upstream 104590 21870415 ~ 21878772 (-) False LOC122343106
XM_043237439.1 mRNA upstream 104591 21870416 ~ 21878792 (-) True LOC122343106
TU44972 other downstream 48489 21327716 ~ 21330093 (-) True LOC122343135
TU44338 other downstream 1096182 20281106 ~ 20282400 (-) True G29906
TU44333 other downstream 1140028 20237137 ~ 20238554 (-) True G29902
unassigned_transcript_385 other downstream 1162343 20216160 ~ 20216239 (-) True trnal-aag_28
unassigned_transcript_384 other downstream 1164250 20214249 ~ 20214332 (-) True trnal-aag_27
TU45110 other upstream 362629 22128454 ~ 22245160 (-) True G30450
TU45123 other upstream 450210 22216035 ~ 22216470 (-) True G30457
TU45768 other upstream 1669155 23434980 ~ 23437015 (-) False LOC122342328
TU45855 other upstream 1731304 23497129 ~ 23546369 (-) False G31017
TU45890 other upstream 1979661 23745486 ~ 23771768 (-) True G31050

Expression Profile