RNA id: XM_043237508.1


Basic Information

Item Value
RNA id XM_043237508.1
length 2693
RNA type mRNA
GC content 0.51
exon number 4
gene id LOC122343153
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 21387853 ~ 21783591 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tatgcttttattaaaatgtttaaagtgttCGCGTTCAGTAGAAAGCGTCAGTGCGGTCTTTCCGTGCCTCGATCGAGGCGTAATGGCGAGTAATTAACGCTTGTTTTGGGGTGTCTTAAACATCGCCACCTCTTTGTTTGAATGAGTTAAGAGCGGAAAGGGCAGACAGATCCAAACATCATTTGAAGAGCTATGTGACGCGCTGTTGAAAAGATGGCATTTATTGTACTGGAGCATGAAGACTTGAAGATCGAAGAAGAGTTCAGAGTCAAGCGTGAAGACGCCGAGGAACAGACGAAggcgtttattaaagaggagagtgaggaACCGTTCAGAGTCAAGCGTGAAGATgctgaggaacaaacagacCTGATGGCACTGAAAGAGGAGAGTCAAGAGGATAATGTTCAGCATGAGAACTTTGATTTGTCGTGTGATTTCATGACTAGAAAGAAATCGCTTAGTTGCTCAAAACCTGAAAAGACTTTGCGAAACAGAGCTCAAAAGACAGCAAACAGAAGTTATTTCAACTGCCAACAGTGCGGGAAAAGTTTCAACAGAAAACGAAGCCTTGAAGTCCACATGAgggttcacaccggagagaaaccgtacgcgtgtcctcagtgtggaaagagtttcaaacACAAGCAGCATCTCGACGACCACgcgaggatccacaccggagagagaccCTTCACCTGCGAGCactgcgggaagagcttcaacagaaaaggaaaccttaaaggccacatgaggatccacacgGGAGAGAAACCTTTCGCATGCATACTGTGCGGAAAGAACTTCAATCAAAAAACCATCCTGAAAAGCCACATAcggattcacaccggagagaaacctcACGCGTGTCCTCAGTGCGGAAAATGCTTTTAGTATAAACAGCACCTCGTCGACCACGtgagagttcacaccggagagaagccgttcgCCTGCAAACTGTGCGGAAAGAGCTTCATTCAGAAACAGAACCTGAAATACCACATGTTAGACCACAGCGGAGAGAAACCGTACACGTGCTCTCAGTGCGGAAGGagttttaaacacaaacacctcGACGAccacatgaggatccacaccggagagagaccCTTCACCTGCCAGCAGTGTGGCAAGAGCTTTACTCAAAAAGGGACCCTTAGAGACCACATGAAAacccacaccggagagaagccgtacGCCTGCCAACTGTGCGGAAAGAACTTCATTCGGAAACAGAACCTCAAGTACCACATGATAAGTCACAGCGGAGAGAAGCCTCACGCGTgtcctcagtgtggaaagagtttcaaacACAAGCAGCACCTCGACGCCCACACGAGGAcccacaccggagagagacccttcacctgccaacagtgcgggaagagcttcacgaAAAAGGGAAACCTCAAAAAACACCTGAAGATCCACTCGAGAGAGAAACCGTTTACGTGCGATcagtgcgggaagagcttttCGCAGACGAGCCAGCTCAACGTccacatgaggatccacacgggagagaagcctttcaGCTGCGAGCTCTGCGGCAAGAGCTTCAGGCAAAGCGCCGAGCTCAAAGCCCACGCCACGAcgcacaccggagagaagccttacgcGTGCCACCAGTGCGGCAAGAGCTACACGCAGAACAGCCAGCTCACCATCCACACGAGGATCCACACGGGAGAGAAGCCCTTCTCCTGCGCCGTGTGCGACAAGAGCTTCACGGTCAAGCGGCGCCTCAAGGCCCACATGAAGAGCCACGCCGAGAAGAACCCCTTCACGTGCTCCCGCTGCGGAAAGAGCTTCACGCAGAAGCGCACCCTCGACGCCCACACGgtgatccacaccggagagaagccgttcagCTGCCCGCGCTGCGGGAAGAGCTTCCGGCTGAAGGGGAACCTCCAGGTccacatgaggatccacaccggagacaAGCCGTTCGAGTGCCAGCAGTGCGGCCGGTGTTTCGCGCAGACGAAGCTCCTGAACGCCCACGTCAGACTTCACGCCGGGGAGAAGCCCTTCATCTGCCcgcagtgcgggaagagcttcaccaACAAAACCAACCTGAAGACCCACATCCGGATCCACACGGGAGAGAATCCCTTCAGCTGCGACCAGTGCGGCGAGAGCTTCAGATACAACGCCAACCTCATCAATCACATGAAGGTCCACTCGGACGGCGGCGCGAAGACGTTCACGGACAGCGAGCAGCTGGAGGACCACGTTTGAGTTCACGTCTGAGCGCGGCCCTCCAAGAGTTTGGCGAGGGAAGGAAGCCTCGGGATGGAGGGAGGAGATCGTCCTCGGCGTCGATCGCGGACTCGCTCCGAGAACAAATTGCCGTTTTCCTTTGTGCAAACTGCAGGAACGATTTTTGCAAAGATCTGCTCATTCGTTCTGAAAGAGCAACGTAATAATTTGGCGTCATGCTGAAAGTTTTGCTTGCATCCGTCGTCTCTCAATGCTTGACCTTAAGGCTCattttatgttgtatatttgtgCTCCTTTGGCCATACCTGATCATCTTCTGTGCTGTGGcttcaaatattaaacagttaCAGTGTATTCCCTCAACTTTTCGGGCATGTGTTCATTTTACTTTGAATCAGAATCTTTGTCAAACTTGATAAGCAATAAATtgacaaactaaacaaaatcgCTTGTTCCTATCGAGctca

Function

GO: NA

KEGG:

id description
K09228 KRAB; KRAB domain-containing zinc finger protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44981 lncRNA downstream 108810 21276222 ~ 21279043 (-) True LOC122343113
TU44930 lncRNA downstream 261782 21117815 ~ 21126071 (-) True G30343
TU44875 lncRNA downstream 319665 21065914 ~ 21068188 (-) True G30301
TU44912 lncRNA downstream 334199 21052978 ~ 21053654 (-) False LOC122343098
TU44899 lncRNA downstream 413788 20972276 ~ 20974065 (-) True G30317
TU45027 lncRNA upstream 95359 21492264 ~ 21492907 (-) True G30406
TU45029 lncRNA upstream 102733 21499638 ~ 21499998 (-) True G30408
XR_006250701.1 lncRNA upstream 271905 21668810 ~ 21673424 (-) False LOC122343179
XR_006250700.1 lncRNA upstream 271905 21668810 ~ 21673424 (-) True LOC122343179
TU45062 lncRNA upstream 276818 21673723 ~ 21676131 (-) True G30425
XM_043236089.1 mRNA downstream 4662 21381792 ~ 21383191 (-) True LOC122342292
XM_043237491.1 mRNA downstream 50972 21327615 ~ 21336881 (-) False LOC122343135
XM_043237421.1 mRNA downstream 65758 21318814 ~ 21322095 (-) False LOC122343094
XM_043237420.1 mRNA downstream 65775 21318814 ~ 21322078 (-) True LOC122343094
XM_043236087.1 mRNA downstream 73883 21309532 ~ 21313970 (-) True LOC122342290
XM_043237304.1 mRNA upstream 87876 21484781 ~ 21487205 (-) True LOC122343027
XM_043236092.1 mRNA upstream 90300 21487205 ~ 21495229 (-) True LOC122342296
XM_043237212.1 mRNA upstream 120568 21517473 ~ 21528946 (-) True LOC122342973
XM_043237341.1 mRNA upstream 140417 21537322 ~ 21542289 (-) True LOC122343039
XM_043236094.1 mRNA upstream 232575 21629480 ~ 21630158 (-) True LOC122342299
TU45006 other downstream 1416 21383469 ~ 21386437 (-) True G30395
TU45009 other downstream 1875 21383469 ~ 21385978 (-) False G30395
TU44972 other downstream 57760 21327716 ~ 21330093 (-) True LOC122343135
TU44338 other downstream 1105453 20281106 ~ 20282400 (-) True G29906
TU44333 other downstream 1149299 20237137 ~ 20238554 (-) True G29902
TU45011 other upstream 232712 21629617 ~ 21776806 (-) True G30396
TU44977 other upstream 340186 21737091 ~ 21740330 (-) True G30372
TU45110 other upstream 731549 22128454 ~ 22245160 (-) True G30450
TU45123 other upstream 819130 22216035 ~ 22216470 (-) True G30457
TU45768 other upstream 2038075 23434980 ~ 23437015 (-) False LOC122342328

Expression Profile