RNA id: TU45027


Basic Information

Item Value
RNA id TU45027
length 408
lncRNA type read_through
GC content 0.34
exon number 2
gene id G30406
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 21492264 ~ 21492907 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAAAATTAAAGTGAAAGCAGATTATGTTTTTCATGTGACTTTTACACTTGATCTTgagatttttttctccatttaatctttttttatttgctcatatgGGAAGATACATGAACataaagagaaagcaaagacaTTTTCAGAAGTTGTCTAGAAACTGAACGTTTTGATCAAAGCAAGTCTTCagctgtggagcagaaagacacttccatattcattatttcagaagaaaaagacacaaggTGCTCCTGgtgtgagtaaaaaaaaacgaaaaaaaaaacatgtaatttcATGGTGTAACCACTAGTTGGCTTGTGAATTCCCTAGTTATTATCATTTAGGCTGTATGGGTATAGCTATACAAATTCATTTGAGTGtgtataattgtgtgtgtgtgtgcgtgtgagtggg

Function

GO:

id name namespace
GO:0044459 obsolete plasma membrane part cellular_component
GO:0042611 MHC protein complex cellular_component
GO:0042613 MHC class II protein complex cellular_component
GO:0098796 membrane protein complex cellular_component
GO:0098797 plasma membrane protein complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44981 lncRNA downstream 213221 21276222 ~ 21279043 (-) True LOC122343113
TU44930 lncRNA downstream 366193 21117815 ~ 21126071 (-) True G30343
TU44875 lncRNA downstream 424076 21065914 ~ 21068188 (-) True G30301
TU44912 lncRNA downstream 438610 21052978 ~ 21053654 (-) False LOC122343098
TU44899 lncRNA downstream 518199 20972276 ~ 20974065 (-) True G30317
TU45029 lncRNA upstream 6731 21499638 ~ 21499998 (-) True G30408
XR_006250701.1 lncRNA upstream 175903 21668810 ~ 21673424 (-) False LOC122343179
XR_006250700.1 lncRNA upstream 175903 21668810 ~ 21673424 (-) True LOC122343179
TU45062 lncRNA upstream 180816 21673723 ~ 21676131 (-) True G30425
TU45059 lncRNA upstream 183969 21676876 ~ 21809618 (-) True G30423
XM_043237304.1 mRNA downstream 5059 21484781 ~ 21487205 (-) True LOC122343027
XM_043237508.1 mRNA downstream 95359 21387853 ~ 21396905 (-) True LOC122343153
XM_043236089.1 mRNA downstream 109073 21381792 ~ 21383191 (-) True LOC122342292
XM_043237491.1 mRNA downstream 155383 21327615 ~ 21336881 (-) False LOC122343135
XM_043237421.1 mRNA downstream 170169 21318814 ~ 21322095 (-) False LOC122343094
XM_043237212.1 mRNA upstream 24566 21517473 ~ 21528946 (-) True LOC122342973
XM_043237341.1 mRNA upstream 44415 21537322 ~ 21542289 (-) True LOC122343039
XM_043236094.1 mRNA upstream 136573 21629480 ~ 21630158 (-) True LOC122342299
XM_043237426.1 mRNA upstream 158457 21651364 ~ 21653997 (-) False LOC122343099
XM_043237425.1 mRNA upstream 158457 21651364 ~ 21653926 (-) True LOC122343099
TU45006 other downstream 105827 21383469 ~ 21386437 (-) True G30395
TU45009 other downstream 106286 21383469 ~ 21385978 (-) False G30395
TU44972 other downstream 162171 21327716 ~ 21330093 (-) True LOC122343135
TU44338 other downstream 1209864 20281106 ~ 20282400 (-) True G29906
TU44333 other downstream 1253710 20237137 ~ 20238554 (-) True G29902
TU45011 other upstream 136710 21629617 ~ 21776806 (-) True G30396
TU44977 other upstream 244184 21737091 ~ 21740330 (-) True G30372
TU45110 other upstream 635547 22128454 ~ 22245160 (-) True G30450
TU45123 other upstream 723128 22216035 ~ 22216470 (-) True G30457
TU45768 other upstream 1942073 23434980 ~ 23437015 (-) False LOC122342328

Expression Profile