RNA id: TU45059


Basic Information

Item Value
RNA id TU45059
length 1822
lncRNA type read_through
GC content 0.40
exon number 3
gene id G30423
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 21676876 ~ 21809618 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aaatcatttaattaaacagcagtcagtgaaatactcacagagcgtttctgcagcatctcacaGCTGGAATGAGTCTCCTGCAATCTGATTGTTCTGATGTGAACCTCTTTGGGTTGAACTCATCCAGCACCTTCTCTGACATCAGTAGTATGTAGGTCAGCACTGTGCACATTGAAGACGAGAGATCTCTTCCtggatgttcatttgaactgagGTAACTCTGTATTTCCTCATATAATGAATGATCTTTGAGCTCAAGTAAGCAGTAGAACAGGTTGACTGAAGCTTCATCTGAGATGTCCTGTTGTTGTAATTCTTTAATGTGTGCACTTAGATTTCTGATGCTCTCTGTGGTGTCTTCAGTCTGTGTGATCAGGCCTTTGAGCAGATTTTGACTGGATTCCACTGAAATTCCCATCAGAAACCGCAGGAACAGGTCCAGATGCCCTCTCTTACTCTGCATTGCTTTTTCAATTGCTCTCTCTGTTAAGTCATGCAATTTGACCTTTCTAAAAGGAAATGTAAGATTTTGTATGACTGTAGTTTGTGAATCCTCAAAGAAAAACGTAAgcccttgcttgttttttttcaggtaacagatgaacacatgcactgcagcaAGGAACTCTTGAACACCCAGATGCACAAAGCAGAAGACCTTTGTCTTATAAAGTCCAACTTCCCTCTTAAAGATCTCAGCGATCATTCCTGTGAACTCAGCATCTTTACTCACATCAATACCACATGCTTTCAGATCTTTCTCatagaacacaatgttttcctgCTTCAGCTGTTCAAACGCTAGCTTGGCTAACTTCAGAATCatctttctatttaaaagtaaGTGCTCTGAACATTCTCCTTGTTGTTTGCCATATTTCTGACTCTTCATGTTCATCTGTATCCTcaggaagtgaatgtacatttcagtgagtgttgtgctgatgttctcttcattgttctcagtgagaatatcctgaagtactgtggctgtgatccagcagaacacaggaatgtggcacatgatgtagagacTACAAGACGTcttaatgtgtgagatgattctggaggACACACTCTGATCTTTGAATTTCTTTCTGAAGTACTCCTCCTTCTGTTGGTCAGTGAATCCTTTCACCTCTGTGAACAATCCTACATACTGAggagggatctgattggctgctgctggtcgtgATGTGACCCAGACCAGAGCTGATGGAAGCAGTTTACCTTTGACCAGACTTGTAAAGAGCACATCTACAGATGATCTTTCCTCAACAGTGTTCATTGTATCACTTTCAAAATTCAAAGGCAGTCGACTctcatcaagtccatcaaatataaacacaagTTTATATTCTGTATAAAACTTTGATTTCTCCAGGTCCTTCAATTCAGGATTAAATTTCAGCAGAAACTCATGGAGACtgacctctctctctttaatcACATTGatctctctgaatggaagcAGGAACACACAGTCTATATCCTGATTAGATTCTCCTTCggcccagtccaggatgaacttgtgCACAGACACAGTTTTCCCAATGCCAGCGACTCCTTTGGTCAACACAATCTTTAACTCATTGTTTTTCCTCagttcagtaaatatatcattgcatttgattgttttgttcagtgtttttttgttcttgaaagCATCATCAATCTTCAGAATCTCATGTTCCTGATTTACATCTTTCATATCTCcctctgtgatgaacagatCTGTGTAAACAGCTTTCAGATCTGTGCCAGTTTCTTTGTTGccctcaaaaatgtattttaccttcatcttcatgttgtttttgtgagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45062 lncRNA downstream 745 21673723 ~ 21676131 (-) True G30425
XR_006250701.1 lncRNA downstream 3452 21668810 ~ 21673424 (-) False LOC122343179
XR_006250700.1 lncRNA downstream 3452 21668810 ~ 21673424 (-) True LOC122343179
TU45029 lncRNA downstream 176878 21499638 ~ 21499998 (-) True G30408
TU45027 lncRNA downstream 183969 21492264 ~ 21492907 (-) True G30406
TU45132 lncRNA upstream 471054 22280672 ~ 22281189 (-) True G30465
TU45173 lncRNA upstream 549599 22359217 ~ 22421953 (-) True G30499
XR_006250717.1 lncRNA upstream 586900 22396518 ~ 22398023 (-) True LOC122343195
TU45181 lncRNA upstream 615974 22425592 ~ 22428757 (-) True G30506
TU45193 lncRNA upstream 677157 22486775 ~ 22487119 (-) True G30518
XM_043237332.1 mRNA downstream 14043 21655902 ~ 21662833 (-) False LOC122343036
XM_043237331.1 mRNA downstream 14043 21655902 ~ 21662833 (-) True LOC122343036
XM_043237330.1 mRNA downstream 14047 21655902 ~ 21662829 (-) False LOC122343036
XM_043237333.1 mRNA downstream 14055 21655902 ~ 21662821 (-) False LOC122343036
XM_043237426.1 mRNA downstream 22879 21651364 ~ 21653997 (-) False LOC122343099
XM_043236101.1 mRNA upstream 37502 21847120 ~ 21860284 (-) True LOC122342306
XM_043237440.1 mRNA upstream 60797 21870415 ~ 21878772 (-) False LOC122343106
XM_043237439.1 mRNA upstream 60798 21870416 ~ 21878792 (-) True LOC122343106
XM_043237393.1 mRNA upstream 426139 22235757 ~ 22239007 (-) True LOC122343076
XM_043237479.1 mRNA upstream 506290 22315908 ~ 22320097 (-) True LOC122343126
TU45006 other downstream 290439 21383469 ~ 21386437 (-) True G30395
TU45009 other downstream 290898 21383469 ~ 21385978 (-) False G30395
TU44972 other downstream 346783 21327716 ~ 21330093 (-) True LOC122343135
TU44338 other downstream 1394476 20281106 ~ 20282400 (-) True G29906
TU44333 other downstream 1438322 20237137 ~ 20238554 (-) True G29902
TU45110 other upstream 318836 22128454 ~ 22245160 (-) True G30450
TU45123 other upstream 406417 22216035 ~ 22216470 (-) True G30457
TU45768 other upstream 1625362 23434980 ~ 23437015 (-) False LOC122342328
TU45855 other upstream 1687511 23497129 ~ 23546369 (-) False G31017
TU45890 other upstream 1935868 23745486 ~ 23771768 (-) True G31050

Expression Profile