RNA id: XM_043236098.1



Basic Information


Item Value
RNA id XM_043236098.1
length 957
RNA type mRNA
GC content 0.48
exon number 3
gene id LOC122342302
representative True

Chromosome Information


Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 21769124 ~ 21772399 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


ATGGAGTTTCTGAAAGTGGAGCTTGAAGACGCGTTCACGGTCGAACCAGAAGATACTGAGACCCAGCTGAAGATGGTGTtcattaaagaggagagtgcaGGCAGGCGTGAAGAAACTTTCAGAGTCAAACTTGAAGATGCTGAAGAACCAACAGACTCAACAGTGCTGAAAGAGGAGCAGGAAGAAACTGAAGAGAAATATCAGTATGAGAACCCTCATGATTTCCTAGAAAAATCGTTTAGTAGTTTACAGTCCGAAAAGAGTTCCACACAAAAAAGGGATGGGATTCGTTTCCCCTGctttcagtgtggaaagagttttagtCGTAAGGCAACCCTCAAAAGCCACATGAAAACTCACCCTGAAGAGAATATGTTCACCTGCACACACTGTGGAAAAAGTTTCGGCACAAAATTGAAACTGAAATACCACACGAAAGTTCACAATGGAAACAAACCCTTCACGTGCAAACAGTGTGGAAGGAGCTTCACTCAGAAAGGAAGCCTTAAGAAGCACATGGCCATTCACACTGGAAAGAGGCCTTACAGCGtgccctcagtgtggaaagagcttcagTCAAAGGGAGGCCTCAAGAAGCACATCTCAACTCACACAGGGGAGAAGCCTTTCACATGCCCTCGgtgcggaaagagtttcagCCAAAAGGGAGGCCTTAAGATCCACATgaggattcacaccggagagaagccgttcacATGCcctcagtgcggaaagagtttcagtCAAAAGGAAGGTCTTAAGAAGCACGTGACGATTCAcacggagagaagccttacgcGCGTGCCCTCGGTGCGGAAAGAGCTTCAGTCAGCGAGGAAGCCTCGAGGgccacatgagagttcacaccggagagaagccgttcacATGCACTCACTGCTTGAAGAGTTTCAGTCACTCCGGATCCCTCAGATACCACATCATGAAAGTTTGCAATAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU45004 lncRNA downstream 3299 21378582 ~ 21765825 (-) True G30394
TU45062 lncRNA downstream 92993 21673723 ~ 21676131 (-) True G30425
XR_006250701.1 lncRNA downstream 95700 21668810 ~ 21673424 (-) False LOC122343179
XR_006250700.1 lncRNA downstream 95700 21668810 ~ 21673424 (-) True LOC122343179
TU45029 lncRNA downstream 269126 21499638 ~ 21499998 (-) True G30408
TU45132 lncRNA upstream 508273 22280672 ~ 22281189 (-) True G30465
TU45173 lncRNA upstream 586818 22359217 ~ 22421953 (-) True G30499
XR_006250717.1 lncRNA upstream 624119 22396518 ~ 22398023 (-) True LOC122343195
TU45181 lncRNA upstream 653193 22425592 ~ 22428757 (-) True G30506
TU45193 lncRNA upstream 714376 22486775 ~ 22487119 (-) True G30518
XM_043236095.1 mRNA downstream 32583 21714679 ~ 21736541 (-) True LOC122342300
XM_043237332.1 mRNA downstream 106291 21655902 ~ 21662833 (-) False LOC122343036
XM_043237331.1 mRNA downstream 106291 21655902 ~ 21662833 (-) True LOC122343036
XM_043237330.1 mRNA downstream 106295 21655902 ~ 21662829 (-) False LOC122343036
XM_043237333.1 mRNA downstream 106303 21655902 ~ 21662821 (-) False LOC122343036
XM_043236099.1 mRNA upstream 2699 21775098 ~ 21780619 (-) True LOC122342303
XM_043236101.1 mRNA upstream 74721 21847120 ~ 21860284 (-) True LOC122342306
XM_043237440.1 mRNA upstream 98016 21870415 ~ 21878772 (-) False LOC122343106
XM_043237439.1 mRNA upstream 98017 21870416 ~ 21878792 (-) True LOC122343106
XM_043237393.1 mRNA upstream 463358 22235757 ~ 22239007 (-) True LOC122343076
TU44977 other downstream 28794 21737091 ~ 21740330 (-) True G30372
TU45006 other downstream 382687 21383469 ~ 21386437 (-) True G30395
TU45009 other downstream 383146 21383469 ~ 21385978 (-) False G30395
TU44972 other downstream 439031 21327716 ~ 21330093 (-) True LOC122343135
TU44338 other downstream 1486724 20281106 ~ 20282400 (-) True G29906
TU45110 other upstream 356055 22128454 ~ 22245160 (-) True G30450
TU45123 other upstream 443636 22216035 ~ 22216470 (-) True G30457
TU45768 other upstream 1662581 23434980 ~ 23437015 (-) False LOC122342328
TU45855 other upstream 1724730 23497129 ~ 23546369 (-) False G31017
TU45890 other upstream 1973087 23745486 ~ 23771768 (-) True G31050

Expression Profile