RNA id: TU45173



Basic Information


Item Value
RNA id TU45173
length 399
lncRNA type sense_over
GC content 0.35
exon number 2
gene id G30499
representative True

Chromosome Information


Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 22359217 ~ 22421953 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


AACaacagcaatatttatttatgcacagagcacatttaaaacacaactaAGGCTATTCCAAAGCTTTGTTCTCGCAATTTTTAAGTTTGATTTTGTGAATTAAGAGAAGGCAGAGGTCACTTGATCTTATGTATCTAGACGGGGTGTATGGATGCTGCGTTTACTGCCACCAACTGGACAGGAGAGTGAAGTGATTAGCTTAAAAAAtttagtaaaactaaataaatatttaaaaaactctATATAACCATATACAATCCTGTATCTCTTAGACACCACATTAAATGATTCCAAACTGTTGACTCATTTTGGGTTTTCTAAATATACCTATTTCTTCCTTGCACAACTCCACAGCACAAATGAGCTGCATTCTCTAGACTCCATGCCCTGCCTCATATT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU45132 lncRNA downstream 78028 22280672 ~ 22281189 (-) True G30465
TU45059 lncRNA downstream 549599 21676876 ~ 21809618 (-) True G30423
TU45070 lncRNA downstream 587017 21769579 ~ 21772200 (-) False LOC122342302
TU45062 lncRNA downstream 683086 21673723 ~ 21676131 (-) True G30425
XR_006250701.1 lncRNA downstream 685793 21668810 ~ 21673424 (-) False LOC122343179
TU45181 lncRNA upstream 3639 22425592 ~ 22428757 (-) True G30506
TU45193 lncRNA upstream 64822 22486775 ~ 22487119 (-) True G30518
TU45195 lncRNA upstream 65467 22487420 ~ 22488169 (-) True G30520
TU45204 lncRNA upstream 78209 22500162 ~ 22501174 (-) True G30525
TU45232 lncRNA upstream 147682 22569635 ~ 22570058 (-) True G30547
XM_043237170.1 mRNA downstream 24424 22325510 ~ 22334793 (-) True LOC122342947
XM_043237479.1 mRNA downstream 39120 22315908 ~ 22320097 (-) True LOC122343126
XM_043237393.1 mRNA downstream 120210 22235757 ~ 22239007 (-) True LOC122343076
XM_043237439.1 mRNA downstream 480425 21870416 ~ 21878792 (-) True LOC122343106
XM_043237440.1 mRNA downstream 480445 21870415 ~ 21878772 (-) False LOC122343106
XM_043237275.1 mRNA upstream 7121 22429074 ~ 22431623 (-) True LOC122343006
XM_043237366.1 mRNA upstream 73333 22495286 ~ 22499529 (-) True LOC122343060
XM_043236105.1 mRNA upstream 146271 22568224 ~ 22577494 (-) True LOC122342313
XM_043236107.1 mRNA upstream 156393 22578346 ~ 22585463 (-) True LOC122342314
XM_043237371.1 mRNA upstream 165770 22587723 ~ 22593908 (-) False LOC122343061
TU45110 other downstream 114057 22128454 ~ 22245160 (-) True G30450
TU45123 other downstream 142747 22216035 ~ 22216470 (-) True G30457
TU45011 other downstream 582411 21629617 ~ 21776806 (-) True G30396
TU44977 other downstream 618887 21737091 ~ 21740330 (-) True G30372
TU45006 other downstream 972780 21383469 ~ 21386437 (-) True G30395
TU45768 other upstream 1013027 23434980 ~ 23437015 (-) False LOC122342328
TU45855 other upstream 1075176 23497129 ~ 23546369 (-) False G31017
TU45890 other upstream 1323533 23745486 ~ 23771768 (-) True G31050
TU45934 other upstream 1688271 24110224 ~ 24110673 (-) True G31091
TU46017 other upstream 1882143 24304096 ~ 24497596 (-) True G31134

Expression Profile