RNA id: TU45232



Basic Information


Item Value
RNA id TU45232
length 336
lncRNA type intronic
GC content 0.49
exon number 2
gene id G30547
representative True

Chromosome Information


Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 22569635 ~ 22570058 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


ctggtattcaatgagcccaagagaacccatgttacacctctctttatctccttacattggctaccgattgcagctcgcatcaagttcaaggcactgatgcttgcatatagaacaaccacagactcggcaccggtctacttccactcactattacaaatctacacaccctctagaagtctgagatctgctagcgagcgacgcctcgtggtaccatctcaaagaggctcgaaatcactctccagaactttctcgttctctgttcctggctggtggaacgatcttcccgtacatatccggaatgctctcactgtctctgtctcacttctcctcccccTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU45204 lncRNA downstream 68461 22500162 ~ 22501174 (-) True G30525
TU45195 lncRNA downstream 81466 22487420 ~ 22488169 (-) True G30520
TU45193 lncRNA downstream 82516 22486775 ~ 22487119 (-) True G30518
TU45181 lncRNA downstream 140878 22425592 ~ 22428757 (-) True G30506
TU45173 lncRNA downstream 147682 22359217 ~ 22421953 (-) True G30499
TU45728 lncRNA upstream 200797 22770855 ~ 22772854 (-) True G30920
TU45737 lncRNA upstream 217488 22787546 ~ 22789302 (-) True G30926
TU45749 lncRNA upstream 288201 22858259 ~ 22861620 (-) False G30938
TU45751 lncRNA upstream 288201 22858259 ~ 22861620 (-) True G30938
TU45790 lncRNA upstream 481690 23051748 ~ 23053620 (-) True G30967
XM_043237366.1 mRNA downstream 70106 22495286 ~ 22499529 (-) True LOC122343060
XM_043237275.1 mRNA downstream 138012 22429074 ~ 22431623 (-) True LOC122343006
XM_043237171.1 mRNA downstream 174035 22385863 ~ 22395600 (-) True LOC122342948
XM_043237170.1 mRNA downstream 234842 22325510 ~ 22334793 (-) True LOC122342947
XM_043237479.1 mRNA downstream 249538 22315908 ~ 22320097 (-) True LOC122343126
XM_043236107.1 mRNA upstream 8288 22578346 ~ 22585463 (-) True LOC122342314
XM_043237371.1 mRNA upstream 17665 22587723 ~ 22593908 (-) False LOC122343061
XM_043237368.1 mRNA upstream 17665 22587723 ~ 22593907 (-) False LOC122343061
XM_043237369.1 mRNA upstream 17665 22587723 ~ 22593881 (-) True LOC122343061
XM_043237370.1 mRNA upstream 17665 22587723 ~ 22593873 (-) False LOC122343061
TU45110 other downstream 324475 22128454 ~ 22245160 (-) True G30450
TU45123 other downstream 353165 22216035 ~ 22216470 (-) True G30457
TU45011 other downstream 792829 21629617 ~ 21776806 (-) True G30396
TU44977 other downstream 829305 21737091 ~ 21740330 (-) True G30372
TU45006 other downstream 1183198 21383469 ~ 21386437 (-) True G30395
TU45768 other upstream 864922 23434980 ~ 23437015 (-) False LOC122342328
TU45855 other upstream 927071 23497129 ~ 23546369 (-) False G31017
TU45890 other upstream 1175428 23745486 ~ 23771768 (-) True G31050
TU45934 other upstream 1540166 24110224 ~ 24110673 (-) True G31091
TU46017 other upstream 1734038 24304096 ~ 24497596 (-) True G31134

Expression Profile