RNA id: XM_043236110.1


Basic Information

Item Value
RNA id XM_043236110.1
length 1113
RNA type mRNA
GC content 0.52
exon number 4
gene id LOC122342317
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 22777983 ~ 22780139 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGGTTTTAGCCAAAAAGACCTTTATTTTGGAGCGGCGCTGTGAGGTCATATGCGCGCGCCGCGCTCTCGCTCCCGTGATTGCGGCTGAAGAAAGGTGGAAAACAGAAGAAAGTGTCCAAACACAGAACCATTCCTGGTGGATCGGCTCTCATACTATCACAGAGATGGCGTCTATTAAAGAGGAGAGCGAAGAGATCAAGATTGAAGAAGTGTTCAGAGTCAAGCTTGAAGATACTGAGCAACAAACGGTCCCAATGGCGTTCAAAAAGGAAGATCAAGAACTGGATGAAGAGCAGGAGAAAGATCAGTGCAGTATGCAACAGGATTTCATGACCGGCGAAAAACCCAGACAGGCTGAAAAGATCTTGTCTCGAAAAAGAGCTCAGAAGACCAAACCCAACCGGACAGCGAAACAAAACCGCCAGGTCCAGAAGAGCGCTCCCACTGGAGAGGCGGCGTTTGCGTGCGAccagtgtggaaagagcttctCAGACGCCAAGCGCCTTAAAAGACATGTACCGATTCACTCCACAGAGAAACCCTTCACGTGCCAGCAGTGTGGGAAAACGTTCAAGTTGAACAAATACCTCTTGACTCACAAGACGGTCCACACCAAAGAGAGGCCCTTCACCTGCACAcagtgcggaaagagcttcTCGCAAGAGGCACATCTGAACAATCACTTGAAGGTCCACGCCAGACAGAAGTCCATCGCGTGCCAGACgtgcggaaagagtttcacACACAAAGGAGATCTTAACACCCACATGAGCCTTCACACCGGTGCTTGGAAGGACTTTCGCTGGCGGCAGCCTTCTCAAGGTTCACGTAACGGCTCACGGCGGAGAGAAGCCGAACATGTGCCATCactgcgggaagagcttcacgaGCGCTACACCCTTAAGAATCACATTCGggtccacaccggagagaagcccttcaCCTGTGCCCAGTGCGGAAGGAGCTTCGCCGTTAAAGAAAACCTGCGGACTCACAAGAGAATTCACTCTGGGGTCAAGCCGTTCACCTGCCAGCACTGTGGAAAGAGTTTCGTACTGAAGGGAAACTTTAAGAGACACGTGTGGCGTCCACACGTGAAAGCGGAAGAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250726.1 lncRNA upstream 226633 22550101 ~ 22551350 (+) True LOC122343204
XR_006250689.1 lncRNA upstream 234152 22542511 ~ 22543831 (+) True LOC122343169
XR_006250715.1 lncRNA upstream 236498 22540384 ~ 22541485 (+) True LOC122343193
TU45207 lncRNA upstream 244951 22532415 ~ 22533032 (+) True G30528
TU45205 lncRNA upstream 271791 22505255 ~ 22506192 (+) True G30526
TU45301 lncRNA downstream 23899 22804038 ~ 23246017 (+) True G30598
TU45303 lncRNA downstream 27849 22807988 ~ 23249868 (+) True G30599
TU45312 lncRNA downstream 73342 22853481 ~ 22869703 (+) True G30607
TU45317 lncRNA downstream 78151 22858290 ~ 22861570 (+) True G30609
TU45335 lncRNA downstream 226835 23006974 ~ 23126523 (+) True G30624
XM_043237261.1 mRNA upstream 29363 22739960 ~ 22748620 (+) True LOC122342997
XM_043237257.1 mRNA upstream 71489 22695800 ~ 22706494 (+) True LOC122342996
XM_043237258.1 mRNA upstream 71489 22695800 ~ 22706494 (+) False LOC122342996
XM_043237259.1 mRNA upstream 71489 22695898 ~ 22706494 (+) False LOC122342996
XM_043237429.1 mRNA upstream 88304 22685702 ~ 22689679 (+) False LOC122343101
XM_043236112.1 mRNA downstream 383556 23163695 ~ 23168007 (+) True LOC122342321
XM_043237277.1 mRNA downstream 388016 23168155 ~ 23183546 (+) True LOC122343008
XM_043237488.1 mRNA downstream 446072 23226211 ~ 23229732 (+) True LOC122343131
XM_043237507.1 mRNA downstream 571788 23351927 ~ 23375871 (+) True LOC122343152
XM_043236120.1 mRNA downstream 833339 23613478 ~ 23614930 (+) True LOC122342330
XR_006250667.1 other upstream 95271 22661826 ~ 22682712 (+) False LOC122343019
TU44785 other upstream 476464 22296897 ~ 22301519 (+) False LOC122342310
TU44767 other upstream 546059 22231470 ~ 22231924 (+) True G30218
TU44630 other upstream 1136227 21639540 ~ 21641756 (+) True G30115
TU44637 other upstream 1147863 21388193 ~ 21630120 (+) True G30119
TU45355 other downstream 348967 23129106 ~ 23130189 (+) True G30636
TU45351 other downstream 377420 23157559 ~ 23159756 (+) True G30632
TU45341 other downstream 383630 23163769 ~ 23167257 (+) False LOC122342321
TU45342 other downstream 383630 23163769 ~ 23167257 (+) False LOC122342321
XR_006250665.1 other downstream 1337150 24117289 ~ 24122820 (+) False LOC122342976

Expression Profile