RNA id: TU45312


Basic Information

Item Value
RNA id TU45312
length 1438
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G30607
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 22853481 ~ 22869703 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACGATGGAGCCGACGgaaggaggagccatggaggagaaGCAGCCAAAAGCAGACAGACAtcgaaacacagcaaacaggagtataagaggcaaggcaacaagagtccaaaaacaggcagaggtcgggtcaggcagtaAACAATCAGAGTATCagagacaggcagggtcaaaaccaaagaatctaagaCAAGGGAAACACAGGGCTAGGCTaactagaaacaaacaacaatcaatcaatgcgacctgcaggtgaggggcctgcttcagaatttatagtcttgaaacaggaagtagcagcagagtgATCACAGATCGTCCAGAGATCTCTCGACAGGTCAAGGACGCTCTACCCAAACCGGCAGAAGGATTTCTGTATGACATCAGGCCTGGTGACTTTGTGGTGGCCAAGGATTTCAGGAGGAAACATTGGAAATCAAGAAGGTGGAACGGCCCGTCCCAGGTCCTGCTGATAATGCACACTGCGGTTAAGGTGGCTGAGAGGGCTATGTGGATACACGCTAGCCACTGCAAAAAGGTCCCCGCACCACCAGAGGGAGACACAACccaataaacagtgattgaccCGCTGCCCCGTGCCAAGGGGGACATCTGACTGACAGAAGTAAGCGAACATGTATGGTGTATGGTATCTGAACACGCAGCATCATCACAGTATGGGAATGATCTGATGTCAGTACAGGCCAACGGATGCCAACAAGAACAAGGATCTTTCCTATCACTGTAGAGGAGCAAGGGCTTTATTGATCATGGAGAATTAAACTGAGTGGACGAAGATCAGAACCCTGAAGAGGGTGGCCGGACGCATTGCTATAGTAAAGGACATACTATCTAACCTGACCTGTTATTGGAATGACGGAGGACAAGACTCCATGGGTGAAATAATTTTGATAAGTGAtcaagaatgatcaaaagggaggagtgtaatggaaattattttagttgattacatttaatgttttattatttactttaacactgaattaaacTAACTTCACTGAAAGATAGATTAAGCAacatatatattcgtaacaCCATTGTACTAACCATGAACACGAATGTGCAAACAGAGAACTGGGATGCTAGAGGTGTgggaaaataatatatgtgtaacaGCTGTTGAACCACCTTATCTGGGTACAGAACACCTTATCTGTGTTGAAGATGGGAAGAAAGCTGGGAACCACTAGATACAGTAAACACGAGATGAGTGGTGTGACTTCAAACTATTTCCATTGGCTCGAGATGGATTCGAGCAACCATGAAATGTAtccttttgcctataaaacctctagCCTGTGAGCACaatgttatctctttgctcacagactccACTGTGtttaaaccagatcattttttgttcctttgcacaaagaaataaaagcaagacaaagacagatTTGTTGGATTCTTCATTCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250726.1 lncRNA upstream 302131 22550101 ~ 22551350 (+) True LOC122343204
XR_006250689.1 lncRNA upstream 309650 22542511 ~ 22543831 (+) True LOC122343169
XR_006250715.1 lncRNA upstream 311996 22540384 ~ 22541485 (+) True LOC122343193
TU45207 lncRNA upstream 320449 22532415 ~ 22533032 (+) True G30528
TU45205 lncRNA upstream 347289 22505255 ~ 22506192 (+) True G30526
TU45335 lncRNA downstream 137271 23006974 ~ 23126523 (+) True G30624
TU45339 lncRNA downstream 196551 23066254 ~ 23143079 (+) True G30628
TU45356 lncRNA downstream 261611 23131314 ~ 23131705 (+) True G30637
XR_006250714.1 lncRNA downstream 317613 23187316 ~ 23193862 (+) False LOC122343191
XR_006250713.1 lncRNA downstream 317613 23187316 ~ 23188795 (+) False LOC122343191
XM_043236110.1 mRNA upstream 73342 22777983 ~ 22780139 (+) True LOC122342317
XM_043237261.1 mRNA upstream 104861 22739960 ~ 22748620 (+) True LOC122342997
XM_043237257.1 mRNA upstream 146987 22695800 ~ 22706494 (+) True LOC122342996
XM_043236112.1 mRNA downstream 293992 23163695 ~ 23168007 (+) True LOC122342321
XM_043237277.1 mRNA downstream 298452 23168155 ~ 23183546 (+) True LOC122343008
XM_043237488.1 mRNA downstream 356508 23226211 ~ 23229732 (+) True LOC122343131
XM_043237507.1 mRNA downstream 482224 23351927 ~ 23375871 (+) True LOC122343152
XM_043236120.1 mRNA downstream 743775 23613478 ~ 23614930 (+) True LOC122342330
TU45293 other upstream 73884 22778042 ~ 22779597 (+) False LOC122342317
XR_006250667.1 other upstream 170769 22661826 ~ 22682712 (+) False LOC122343019
TU44785 other upstream 551962 22296897 ~ 22301519 (+) False LOC122342310
TU44767 other upstream 621557 22231470 ~ 22231924 (+) True G30218
TU44630 other upstream 1211725 21639540 ~ 21641756 (+) True G30115
TU45355 other downstream 259403 23129106 ~ 23130189 (+) True G30636
TU45351 other downstream 287856 23157559 ~ 23159756 (+) True G30632
TU45341 other downstream 294066 23163769 ~ 23167257 (+) False LOC122342321
TU45342 other downstream 294066 23163769 ~ 23167257 (+) False LOC122342321
XR_006250665.1 other downstream 1247586 24117289 ~ 24122820 (+) False LOC122342976

Expression Profile