RNA id: XM_043236112.1


Basic Information

Item Value
RNA id XM_043236112.1
length 1150
RNA type mRNA
GC content 0.40
exon number 5
gene id LOC122342321
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 23163695 ~ 23168007 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACGTGAAAGCAGAAGTTGTACATGTTGTGTTCACCCTTGactgtgtgatttttttcattttgaaaatctgaTCATCGAACTGTCATTATTGCTTCCTGATGTGGAAATGTACATGGACCTAATGAAGAAACCAAGGACATACTGAGAACTTGTCTAGTAGCAGAACAACCTGGTCAGTCGTGAGCTGTGGAGCGCAAAGTCACTTCCTTATTCATctgTGAGTTGGTGAAGGAAGATGGCGTTTGTCAAGGAGCTGCTCGTGGGGTCACTGAAGGGGCTGGTAGAAGCTGAACTAAAGGAGTTTCACTGGCGCCTAATGAATACATATCATAAGCATATAACAAAGTCTGAATTGGAGAAGGCAGATATATTTGACACAGTAGATAAGATGGTGGTGTGTTTTGGACCAGAAGAAGCTGTGGAGGTCATGGTAGATATCCTGAGAAAGATGAACCAAAATGATCTGGCTGAACAGTTGGTGAAAGAACACACGCAAGctCAGACGGAGGGCAATATGAATATATCTGCTGCTGTTGGAGagcagcaaaactgttttgaaactcacaaaacaaacatgaagaagaaggtagaatatatttttgagggcagcagagaaaatgaagcacaactcaaggctgtttacacagatctgttcatcacagaggGAGATATGGAAGATGTCAATCACGAACATGAAATTCTTAAGATTGATAATGCTTTaaagcacagaaaaacacaggaaaaaccagtcaaatgtaatgatatatttactgaactgaggaaaaataatgagaaaaaacacTcagcagccaatctgATTCCTCCTCAGTATGTAGGTTTGTTCACAGAGGTTCGAGGATTTACTGACCAACAGAAGGAGCAGTACTTCACAAAGAGGATGAAAGATCAAAGTCTGTcctccagaatcatctcacacattaagACGTCGCGTAgtctctacatcatgtgccacattccTGTATTCTGCTGGATCACAGCCACAGTACTTCAGGATATTCTCACAGAGAACAATGAAGAGAACATAAGCACAACactcactgaaatgtacattgaCTTTTTGCTAATACTGTTGGATATGAAGAACCAGAAATTGATGAACAAGATGAAAGAGAATGTTCAGAgcacttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45339 lncRNA upstream 20616 23066254 ~ 23143079 (+) True G30628
TU45356 lncRNA upstream 31990 23131314 ~ 23131705 (+) True G30637
TU45335 lncRNA upstream 37172 23006974 ~ 23126523 (+) True G30624
TU45312 lncRNA upstream 293992 22853481 ~ 22869703 (+) True G30607
TU45317 lncRNA upstream 302125 22858290 ~ 22861570 (+) True G30609
XR_006250714.1 lncRNA downstream 19309 23187316 ~ 23193862 (+) False LOC122343191
XR_006250713.1 lncRNA downstream 19309 23187316 ~ 23188795 (+) False LOC122343191
TU45360 lncRNA downstream 24793 23192800 ~ 23193862 (+) True LOC122343191
TU45375 lncRNA downstream 95590 23263597 ~ 23264466 (+) True G30652
TU45376 lncRNA downstream 96526 23264533 ~ 23264741 (+) True G30653
XM_043236110.1 mRNA upstream 383556 22777983 ~ 22780139 (+) True LOC122342317
XM_043237261.1 mRNA upstream 415075 22739960 ~ 22748620 (+) True LOC122342997
XM_043237257.1 mRNA upstream 457201 22695800 ~ 22706494 (+) True LOC122342996
XM_043237258.1 mRNA upstream 457201 22695800 ~ 22706494 (+) False LOC122342996
XM_043237259.1 mRNA upstream 457201 22695898 ~ 22706494 (+) False LOC122342996
XM_043237277.1 mRNA downstream 148 23168155 ~ 23183546 (+) True LOC122343008
XM_043237488.1 mRNA downstream 58204 23226211 ~ 23229732 (+) True LOC122343131
XM_043237507.1 mRNA downstream 183920 23351927 ~ 23375871 (+) True LOC122343152
XM_043236120.1 mRNA downstream 445471 23613478 ~ 23614930 (+) True LOC122342330
XM_043237168.1 mRNA downstream 465791 23633798 ~ 24144571 (+) True LOC122342945
TU45351 other upstream 3939 23157559 ~ 23159756 (+) True G30632
TU45355 other upstream 33506 23129106 ~ 23130189 (+) True G30636
TU45293 other upstream 384098 22778042 ~ 22779597 (+) False LOC122342317
XR_006250667.1 other upstream 480983 22661826 ~ 22682712 (+) False LOC122343019
TU44785 other upstream 862176 22296897 ~ 22301519 (+) False LOC122342310
XR_006250665.1 other downstream 949282 24117289 ~ 24122820 (+) False LOC122342976
XR_006250666.1 other downstream 965043 24133050 ~ 24141411 (+) False LOC122342990
XR_006250669.1 other downstream 1286318 24454325 ~ 24466400 (+) False LOC122343028
XR_006250668.1 other downstream 1297447 24465454 ~ 24470867 (+) False LOC122343023
TU45649 other downstream 1468357 24636364 ~ 24638654 (+) False LOC122343159

Expression Profile