RNA id: TU45465



Basic Information


Item Value
RNA id TU45465
length 914
lncRNA type read_through
GC content 0.42
exon number 3
gene id G30723
representative True

Chromosome Information


Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 23769174 ~ 24202672 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


acacacacacacaattcttatctttctgtttctatagaagttgagctgcagtattaatgtcttgaagagactcataacatctcactgttactgattcatcatgcagctcaaagcattctgggtagaatctcatcagtctcttctgattcatcaacacagtttcactgaggatctaaaataaagataaaacccaagacagagtgtctgagtgaatgtggtctggactgtgtggatgagtctcattgagtcagagacgctgaagaaggacagagttcctgcgctctcatccacatacactcctactctgtagATATCTTCATActctcctgttcttcttcttctgatgatgatgggcttcacagagaGATCAGTCTCTATCTTATTGTGTCTGAAGGAGTATCTGTCAGGAGAGCagatcaaactccaggactgatcattagatccaaacacacactcttcacccggtcccttcctgctgatgttcttatatgacactgatatagaCACATCTCCActccactcagtctcccagtaacagcgtccacacacactctctctacacaacacctgaggacacacaccatcaaatctgtctggatgatcaggatacgactgagactgagacacacacgtcacctttctgttctcctcagacagaatgagttcagtgtgtgctgtgtttggatccagtgtgaaaaaacacaccCATTTCTTGagtcctgctgtaatcctggattctcctccatgctcaacactaaaaaacacacacatagtcagtcagtcagtagaAGACTATGCAGTTGATaacattgaaaaaattattataattatatagatattgttttttgtcttgtttccagacaaACAACTTCCTTGCTGTCCACTTTTTTATGCCACACAAGTTcatagaggtg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU45425 lncRNA upstream 7679 23456275 ~ 23761495 (+) True G30688
TU45401 lncRNA upstream 230137 23400056 ~ 23539037 (+) True G30674
TU45405 lncRNA upstream 349665 23416682 ~ 23419509 (+) False G30676
TU45406 lncRNA upstream 349665 23416682 ~ 23419509 (+) True G30676
TU45381 lncRNA upstream 486362 23274505 ~ 23282812 (+) True G30658
TU45595 lncRNA downstream 107667 24310339 ~ 24314288 (+) True G30819
TU45594 lncRNA downstream 110522 24313194 ~ 24314288 (+) False G30819
XR_006250692.1 lncRNA downstream 215171 24417843 ~ 24419568 (+) True LOC122343172
TU45587 lncRNA downstream 253350 24456022 ~ 24486887 (+) True G30812
XR_006250675.1 lncRNA downstream 433680 24636352 ~ 24638266 (+) False LOC122343159
XM_043236120.1 mRNA upstream 154244 23613478 ~ 23614930 (+) True LOC122342330
XM_043237507.1 mRNA upstream 393303 23351927 ~ 23375871 (+) True LOC122343152
XM_043237488.1 mRNA upstream 539442 23226211 ~ 23229732 (+) True LOC122343131
XM_043237277.1 mRNA upstream 585628 23168155 ~ 23183546 (+) True LOC122343008
XM_043236112.1 mRNA upstream 601167 23163695 ~ 23168007 (+) True LOC122342321
XM_043236121.1 mRNA downstream 19405 24222077 ~ 24225829 (+) True LOC122342331
XM_043236123.1 mRNA downstream 29694 24232366 ~ 24244625 (+) True LOC122342332
XM_043237410.1 mRNA downstream 42103 24244775 ~ 24251547 (+) True LOC122343090
XM_043237409.1 mRNA downstream 42103 24244775 ~ 24251547 (+) False LOC122343090
XM_043237414.1 mRNA downstream 42103 24244775 ~ 24248366 (+) False LOC122343090
TU45341 other upstream 601917 23163769 ~ 23167257 (+) False LOC122342321
TU45342 other upstream 601917 23163769 ~ 23167257 (+) False LOC122342321
TU45351 other upstream 609418 23157559 ~ 23159756 (+) True G30632
TU45355 other upstream 638985 23129106 ~ 23130189 (+) True G30636
TU45293 other upstream 989577 22778042 ~ 22779597 (+) False LOC122342317
XR_006250669.1 other downstream 251653 24454325 ~ 24466400 (+) False LOC122343028
XR_006250668.1 other downstream 262782 24465454 ~ 24470867 (+) False LOC122343023
TU45649 other downstream 433692 24636364 ~ 24638654 (+) False LOC122343159
TU45653 other downstream 437457 24640129 ~ 24646571 (+) True LOC122343125
TU45681 other downstream 518752 24721424 ~ 24728447 (+) True G30882

Expression Profile