RNA id: TU45587


Basic Information

Item Value
RNA id TU45587
length 607
lncRNA type read_through
GC content 0.47
exon number 3
gene id G30812
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 24456022 ~ 24486887 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtctctctgtgtgtgtgtgtgagggtcaCCTATGAGGGCGGTCAGCACGTTGGCGGCCCCGAAGCGCCGGAGCTCGTGGGTCCAGCGGCGCACCGAGTCGAAGCTGTCCCTCCGGCTGATGTCATAGGTGATCAGGGCCCCGTGAGCGCTGCGGTAGTAGCTCTGAGTGATGGTGCGGAAACGCTCCTGCCCCGCCGTGTCCCACACCtgcatctacacacacacacacacacacagagacacagacacacacatcagatTGATGTCTACTGCACTCTGTAGGTGGCTTACTGTTCACtaaacatactacatactaaaCACTGTgtgtggactttttttttttcacaagacTGATGTTTGAATCATTTTCTCATCAATGACAATGTGTCCAATGTACTGCTCCTTAAGGTTGaatactgaaatactgtccaatAATAGACTTTTTACAAATCCTGTTCATGTTCTGTTAAATACTCAGTACAAGTGTATTGATcattcagtaataaaaatatttttcttgacTAAAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250692.1 lncRNA upstream 36454 24417843 ~ 24419568 (+) True LOC122343172
TU45595 lncRNA upstream 141734 24310339 ~ 24314288 (+) True G30819
TU45594 lncRNA upstream 141734 24313194 ~ 24314288 (+) False G30819
TU45514 lncRNA upstream 446131 24003642 ~ 24009891 (+) True G30754
TU45513 lncRNA upstream 446238 24003642 ~ 24009784 (+) False G30754
XR_006250675.1 lncRNA downstream 149465 24636352 ~ 24638266 (+) False LOC122343159
TU45650 lncRNA downstream 149477 24636364 ~ 24638654 (+) True LOC122343159
TU45666 lncRNA downstream 186080 24672967 ~ 24673594 (+) False LOC122343086
TU45676 lncRNA downstream 227810 24714697 ~ 24714998 (+) True G30877
TU46134 lncRNA downstream 501980 24988867 ~ 24989274 (+) True G31223
XM_043237342.1 mRNA upstream 2814 24449021 ~ 24453208 (+) True ttll1
XM_043237359.1 mRNA upstream 22196 24427508 ~ 24433826 (+) True LOC122343053
XM_043236129.1 mRNA upstream 40796 24414458 ~ 24415226 (+) True LOC122342343
XM_043236127.1 mRNA upstream 133884 24319640 ~ 24322138 (+) True LOC122342339
XM_043237469.1 mRNA upstream 143275 24309427 ~ 24312747 (+) True LOC122343118
XM_043237289.1 mRNA downstream 6190 24493077 ~ 24497580 (+) True cct2
XM_043237350.1 mRNA downstream 11720 24498607 ~ 24502130 (+) True LOC122343045
XM_043237320.1 mRNA downstream 82107 24568994 ~ 24574432 (+) False LOC122343032
XM_043237316.1 mRNA downstream 82231 24569118 ~ 24574432 (+) False LOC122343032
XM_043237317.1 mRNA downstream 82231 24569118 ~ 24574432 (+) False LOC122343032
XR_006250666.1 other upstream 314611 24133050 ~ 24141411 (+) False LOC122342990
XR_006250665.1 other upstream 333202 24117289 ~ 24122820 (+) False LOC122342976
TU45341 other upstream 1288765 23163769 ~ 23167257 (+) False LOC122342321
TU45342 other upstream 1288765 23163769 ~ 23167257 (+) False LOC122342321
TU45351 other upstream 1296266 23157559 ~ 23159756 (+) True G30632
TU45649 other downstream 149477 24636364 ~ 24638654 (+) False LOC122343159
TU45653 other downstream 153242 24640129 ~ 24646571 (+) True LOC122343125
TU45681 other downstream 234537 24721424 ~ 24728447 (+) True G30882
XR_006250558.1 other downstream 256961 24743848 ~ 24767552 (+) False LOC122342408
XR_006250648.1 other downstream 1148155 25635042 ~ 25684620 (+) False LOC122342771

Expression Profile