RNA id: TU45595



Basic Information


Item Value
RNA id TU45595
length 620
lncRNA type sense_over
GC content 0.56
exon number 2
gene id G30819
representative True

Chromosome Information


Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 24310339 ~ 24314288 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


gtgagagtgtgtgtgtgtgtgtgagagagtgtgtgtgattacCTGAAGAGGAGCCGAACAGTGACTCCTCATCGCTCCAGTTCTCCTGCATCCCGACACTTCCTCCCACCGggccctgaaacacacacacacacacacacacagagagtctCAGTCTCagtccctctctctcacacacacacacacacacacacacacactcacttcctGCTGTGAGTTCCTCCGGACGGAGAGCTGTGTCGGTGGTGTGTCTGTGAAGCTGGAGACGAGCTGAGATCATCAGACTCACTGGACACACtcctgaggacacacacacacacacacacacacacggtgaaAACCACTCCACTGCAGTGCTCCGCTAACCGGAGGGTGACCTCTCACCTGTGAtcgcttcttcttcttctgtctgtgtctgcTGGACTCCTCAGACTCCTCTTCACTGGACAGGACCATCCTgcgggacacacacacacacggccctGACCGTCACTGACCTCTgaccggacacacacacacacacgctctcgcTGGGAACGGACGTACCTCTTCTGTCTGCGTCTGTCctgactgaaacacacacactcgtcaGAGCAGAGCTCACACACCgtctgctcctc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU45490 lncRNA upstream 98859 23799027 ~ 24211480 (+) False G30743
TU45465 lncRNA upstream 107667 23769174 ~ 24202672 (+) True G30723
TU45497 lncRNA upstream 262978 23787750 ~ 24047361 (+) False G30743
TU45496 lncRNA upstream 262978 23820614 ~ 24047361 (+) True G30743
TU45503 lncRNA upstream 279598 23907305 ~ 24030741 (+) True G30748
XR_006250692.1 lncRNA downstream 103555 24417843 ~ 24419568 (+) True LOC122343172
TU45587 lncRNA downstream 141734 24456022 ~ 24486887 (+) True G30812
XR_006250675.1 lncRNA downstream 322064 24636352 ~ 24638266 (+) False LOC122343159
TU45650 lncRNA downstream 322076 24636364 ~ 24638654 (+) True LOC122343159
TU45666 lncRNA downstream 358679 24672967 ~ 24673594 (+) False LOC122343086
XM_043236124.1 mRNA upstream 50823 24252667 ~ 24259516 (+) True LOC122342333
XM_043237411.1 mRNA upstream 57811 24248388 ~ 24252528 (+) False LOC122343090
XM_043237412.1 mRNA upstream 57811 24249984 ~ 24252528 (+) False LOC122343090
XM_043237410.1 mRNA upstream 58792 24244775 ~ 24251547 (+) True LOC122343090
XM_043237409.1 mRNA upstream 58792 24244775 ~ 24251547 (+) False LOC122343090
XM_043236127.1 mRNA downstream 5352 24319640 ~ 24322138 (+) True LOC122342339
XM_043236129.1 mRNA downstream 100170 24414458 ~ 24415226 (+) True LOC122342343
XM_043237359.1 mRNA downstream 113220 24427508 ~ 24433826 (+) True LOC122343053
XM_043237342.1 mRNA downstream 134733 24449021 ~ 24453208 (+) True ttll1
XM_043237307.1 mRNA downstream 139982 24454270 ~ 24464904 (+) False LOC122343028
XR_006250666.1 other upstream 168928 24133050 ~ 24141411 (+) False LOC122342990
XR_006250665.1 other upstream 187519 24117289 ~ 24122820 (+) False LOC122342976
TU45341 other upstream 1143082 23163769 ~ 23167257 (+) False LOC122342321
TU45342 other upstream 1143082 23163769 ~ 23167257 (+) False LOC122342321
TU45351 other upstream 1150583 23157559 ~ 23159756 (+) True G30632
XR_006250669.1 other downstream 140037 24454325 ~ 24466400 (+) False LOC122343028
XR_006250668.1 other downstream 151166 24465454 ~ 24470867 (+) False LOC122343023
TU45649 other downstream 322076 24636364 ~ 24638654 (+) False LOC122343159
TU45653 other downstream 325841 24640129 ~ 24646571 (+) True LOC122343125
TU45681 other downstream 407136 24721424 ~ 24728447 (+) True G30882

Expression Profile